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We present a set of algorithms implementing multidimensional scaling (MDS) for large data sets. MDS is a family of dimensionality reduction techniques using a $n \times n$ distance matrix as input, where $n$ is the number of individuals,…

Computation · Statistics 2024-02-02 Pedro Delicado , Cristian Pachón-García

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

Machine Learning · Computer Science 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

In this paper, we present Sinkhorn multidimensional scaling (Sinkhorn MDS) as a method for visualizing shape functionals in shape spaces. This approach uses the Sinkhorn divergence to map these infinite-dimensional spaces into…

Optimization and Control · Mathematics 2024-09-24 Toshiaki Yachimura , Jun Okamoto , Lorenzo Cavallina

Metric Multidimensional scaling (MDS) is a classical method for generating meaningful (non-linear) low-dimensional embeddings of high-dimensional data. MDS has a long history in the statistics, machine learning, and graph drawing…

Machine Learning · Computer Science 2021-09-24 Erik Demaine , Adam Hesterberg , Frederic Koehler , Jayson Lynch , John Urschel

Classical metric and non-metric multidimensional scaling (MDS) variants are widely known manifold learning (ML) methods which enable construction of low dimensional representation (projections) of high dimensional data inputs. However,…

Data Analysis, Statistics and Probability · Physics 2014-06-16 Denis Horvath , Jozef Ulicny , Branislav Brutovsky

Manifold learning offers nonlinear dimensionality reduction of high-dimensional datasets. In this paper, we bring geometry processing to bear on manifold learning by introducing a new approach based on metric connection for generating a…

Machine Learning · Computer Science 2018-11-05 Max Budninskiy , Glorian Yin , Leman Feng , Yiying Tong , Mathieu Desbrun

The lack of generalization in learning-based autonomous driving applications is shown by the narrow range of road scenarios that vehicles can currently cover. A generalizable approach should capture many distinct road structures and…

Machine Learning · Computer Science 2025-04-25 Juan Carlos Climent Pardo

We extend our study of Motion Planning via Manifold Samples (MMS), a general algorithmic framework that combines geometric methods for the exact and complete analysis of low-dimensional configuration spaces with sampling-based approaches…

Robotics · Computer Science 2015-09-17 Oren Salzman , Michael Hemmer , Dan Halperin

We present a new technique for visualizing high-dimensional data called cluster MDS (cl-MDS), which addresses a common difficulty of dimensionality reduction methods: preserving both local and global structures of the original sample in a…

Graphics · Computer Science 2024-05-27 Patricia Hernández-León , Miguel A. Caro

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

Human-Computer Interaction · Computer Science 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Deep Metric Learning (DML) serves to learn an embedding function to project semantically similar data into nearby embedding space and plays a vital role in many applications, such as image retrieval and face recognition. However, the…

Computer Vision and Pattern Recognition · Computer Science 2022-08-02 Lizhao Liu , Shangxin Huang , Zhuangwei Zhuang , Ran Yang , Mingkui Tan , Yaowei Wang

Manifold learning techniques for nonlinear dimension reduction assume that high-dimensional feature vectors lie on a low-dimensional manifold, then attempt to exploit manifold structure to obtain useful low-dimensional Euclidean…

Machine Learning · Statistics 2021-10-25 Michael W. Trosset , Gokcen Buyukbas

Multidimensional scaling (MDS) is a class of projective algorithms traditionally used in Euclidean space to produce two- or three-dimensional visualizations of datasets of multidimensional points or point distances. More recently however,…

Machine Learning · Statistics 2016-02-15 Andrej Cvetkovski , Mark Crovella

Deep-feature-based perceptual similarity models have demonstrated strong alignment with human visual perception in Image Quality Assessment (IQA). However, most existing approaches operate at a single spatial scale, implicitly assuming that…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Danling Kang , Xue-Hua Chen , Bin Liu , Keke Zhang , Weiling Chen , Tiesong Zhao

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

The landmark multi-dimensional scaling (LMDS) is a leading method that embeds new points to an existing coordinate system based on observed distance information. It has long been known as a variant of Nystr\"{o}m algorithm. It was recently…

Optimization and Control · Mathematics 2025-09-16 Ting Ouyang , Lingchen Kong , Houduo Qi

Real-world data such as digital images, MRI scans and electroencephalography signals are naturally represented as matrices with structural information. Most existing classifiers aim to capture these structures by regularizing the regression…

Machine Learning · Statistics 2018-12-31 Yunfei Ye , Dong Han

Manifold learning approaches seek the intrinsic, low-dimensional data structure within a high-dimensional space. Mainstream manifold learning algorithms, such as Isomap, UMAP, $t$-SNE, Diffusion Map, and Laplacian Eigenmaps do not use data…

Machine Learning · Statistics 2023-07-04 Jake S. Rhodes

One of the fundamental problems within the field of machine learning is dimensionality reduction. Dimensionality reduction methods make it possible to combat the so-called curse of dimensionality, visualize high-dimensional data and, in…

Machine Learning · Computer Science 2025-05-12 Sergio García-Heredia , Ángela Fernández , Carlos M. Alaíz

Multidimensional scaling (MDS) is a popular dimensionality reduction techniques that has been widely used for network visualization and cooperative localization. However, the traditional stress minimization formulation of MDS necessitates…

Optimization and Control · Mathematics 2016-12-22 Ketan Rajawat , Sandeep Kumar