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Diseases involve complex processes and modifications to the cellular machinery. The gene expression profile of the affected cells contains characteristic patterns linked to a disease. Hence, biological knowledge pertaining to a disease can…

Quantitative Methods · Quantitative Biology 2020-04-13 Thomas Gaudelet , Noel Malod-Dognin , Jon Sanchez-Valle , Vera Pancaldi , Alfonso Valencia , Natasa Przulj

Vessel segmentation is widely used to help with vascular disease diagnosis. Vessels reconstructed using existing methods are often not sufficiently accurate to meet clinical use standards. This is because 3D vessel structures are highly…

Image and Video Processing · Electrical Eng. & Systems 2023-01-09 Gangming Zhao , Kongming Liang , Chengwei Pan , Fandong Zhang , Xianpeng Wu , Xinyang Hu , Yizhou Yu

Community Search (CS) is one of the fundamental tasks in network science and has attracted much attention due to its ability to discover personalized communities with a wide range of applications. Given any query nodes, CS seeks to find a…

Social and Information Networks · Computer Science 2022-10-18 Ali Behrouz , Farnoosh Hashemi

Peer assessment systems are emerging in many social and multi-agent settings, such as peer grading in large (online) classes, peer review in conferences, peer art evaluation, etc. However, peer assessments might not be as accurate as expert…

Computers and Society · Computer Science 2021-11-09 Alireza A. Namanloo , Julie Thorpe , Amirali Salehi-Abari

An evolving area of research in deep learning is the study of architectures and inductive biases that support the learning of relational feature representations. In this paper, we address the challenge of learning representations of…

Machine Learning · Computer Science 2024-09-30 Awni Altabaa , John Lafferty

This paper studies causal inference with observational data from a single large network. We consider a nonparametric model with interference in both potential outcomes and selection into treatment. Specifically, both stages may be the…

Econometrics · Economics 2025-12-30 Michael P. Leung , Pantelis Loupos

Infrared and visible image fusion aims to extract complementary features to synthesize a single fused image. Many methods employ convolutional neural networks (CNNs) to extract local features due to its translation invariance and locality.…

Computer Vision and Pattern Recognition · Computer Science 2023-11-02 Jing Li , Lu Bai , Bin Yang , Chang Li , Lingfei Ma , Edwin R. Hancock

Graph convolution networks, like message passing graph convolution networks (MPGCNs), have been a powerful tool in representation learning of networked data. However, when data is heterogeneous, most architectures are limited as they employ…

Machine Learning · Computer Science 2021-06-21 Xing Gao , Wenrui Dai , Chenglin Li , Junni Zou , Hongkai Xiong , Pascal Frossard

We propose Graph Tree Networks (GTNets), a deep graph learning architecture with a new general message passing scheme that originates from the tree representation of graphs. In the tree representation, messages propagate upward from the…

Machine Learning · Computer Science 2022-04-28 Nan Wu , Chaofan Wang

Graph convolution networks have recently garnered a lot of attention for representation learning on non-Euclidean feature spaces. Recent research has focused on stacking multiple layers like in convolutional neural networks for the…

Machine Learning · Computer Science 2021-05-05 Rangan Das , Bikram Boote , Saumik Bhattacharya , Ujjwal Maulik

Graph Neural Networks (GNNs) aim to extend deep learning techniques to graph data and have achieved significant progress in graph analysis tasks (e.g., node classification) in recent years. However, similar to other deep neural networks…

Human-Computer Interaction · Computer Science 2022-04-08 Zhihua Jin , Yong Wang , Qianwen Wang , Yao Ming , Tengfei Ma , Huamin Qu

A fundamental computation for statistical inference and accurate decision-making is to compute the marginal probabilities or most probable states of task-relevant variables. Probabilistic graphical models can efficiently represent the…

Machine Learning · Computer Science 2019-06-28 KiJung Yoon , Renjie Liao , Yuwen Xiong , Lisa Zhang , Ethan Fetaya , Raquel Urtasun , Richard Zemel , Xaq Pitkow

A common observation in the Graph Convolutional Network (GCN) literature is that stacking GCN layers may or may not result in better performance on tasks like node classification and edge prediction. We have found empirically that a graph's…

Machine Learning · Computer Science 2025-09-11 Shalima Binta Manir , Tim Oates

Knowledge graphs are graphical representations of large databases of facts, which typically suffer from incompleteness. Inferring missing relations (links) between entities (nodes) is the task of link prediction. A recent state-of-the-art…

Machine Learning · Computer Science 2019-09-12 Ivana Balažević , Carl Allen , Timothy M. Hospedales

In this paper, we introduce a new approach for drawing diagrams that have applications in software visualization. Our approach is to use a technique we call confluent drawing for visualizing non-planar diagrams in a planar way. This…

Computational Geometry · Computer Science 2007-05-23 Matthew Dickerson , David Eppstein , Michael T. Goodrich , Jeremy Meng

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli

We present an end-to-end, interpretable, deep-learning architecture to learn a graph kernel that predicts the outcome of chronic disease drug prescription. This is achieved through a deep metric learning collaborative with a Support Vector…

Machine Learning · Computer Science 2020-08-06 Hao-Ren Yao , Der-Chen Chang , Ophir Frieder , Wendy Huang , I-Chia Liang , Chi-Feng Hung

Biomedical information graphs are crucial for interaction discovering of biomedical information in modern age, such as identification of multifarious molecular interactions and drug discovery, which attracts increasing interests in…

Machine Learning · Computer Science 2024-02-20 Zecheng Yin

Graph representation learning is fundamental for analyzing graph-structured data. Exploring invariant graph representations remains a challenge for most existing graph representation learning methods. In this paper, we propose a cross-view…

Machine Learning · Computer Science 2025-04-15 Jie Chen , Hua Mao , Wai Lok Woo , Chuanbin Liu , Xi Peng

The novel corona virus (Covid-19) has introduced significant challenges due to its rapid spreading nature through respiratory transmission. As a result, there is a huge demand for Artificial Intelligence (AI) based quick disease diagnosis…

Image and Video Processing · Electrical Eng. & Systems 2021-05-24 Thosini Bamunu Mudiyanselage , Nipuna Senanayake , Chunyan Ji , Yi Pan , Yanqing Zhang