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Graph alignment, which aims at identifying corresponding entities across multiple networks, has been widely applied in various domains. As the graphs to be aligned are usually constructed from different sources, the inconsistency issues of…

Databases · Computer Science 2023-04-21 Jianheng Tang , Weiqi Zhang , Jiajin Li , Kangfei Zhao , Fugee Tsung , Jia Li

With the great success of deep learning in various domains, graph neural networks (GNNs) also become a dominant approach to graph classification. By the help of a global readout operation that simply aggregates all node (or node-cluster)…

Machine Learning · Computer Science 2021-11-24 Dongha Lee , Su Kim , Seonghyeon Lee , Chanyoung Park , Hwanjo Yu

We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in…

Machine Learning · Computer Science 2025-02-26 Batu El , Deepro Choudhury , Pietro Liò , Chaitanya K. Joshi

With growing demand for interpretability in deep learning, especially in high stakes domains, Concept Bottleneck Models (CBMs) address this by inserting human understandable concepts into the prediction pipeline, but they are generally…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Jiakai Lin , Jinchang Zhang , Guoyu Lu

Current graph neural networks (GNNs) lack generalizability with respect to scales (graph sizes, graph diameters, edge weights, etc..) when solving many graph analysis problems. Taking the perspective of synthesizing graph theory programs,…

Machine Learning · Computer Science 2020-10-27 Hao Tang , Zhiao Huang , Jiayuan Gu , Bao-Liang Lu , Hao Su

Graph Neural Networks (GNNs) have emerged as a prominent framework for graph mining, leading to significant advances across various domains. Stemmed from the node-wise representations of GNNs, existing explanation studies have embraced the…

Machine Learning · Computer Science 2024-07-03 Yuwen Wang , Shunyu Liu , Tongya Zheng , Kaixuan Chen , Mingli Song

Domain adaptation (DA) tries to tackle the scenarios when the test data does not fully follow the same distribution of the training data, and multi-source domain adaptation (MSDA) is very attractive for real world applications. By learning…

Machine Learning · Computer Science 2024-01-17 Jin Yuan , Feng Hou , Yangzhou Du , Zhongchao Shi , Xin Geng , Jianping Fan , Yong Rui

Finding dense subgraphs is a core problem with numerous graph mining applications such as community detection in social networks and anomaly detection. However, in many real-world networks connections are not equal. One way to label edges…

Data Structures and Algorithms · Computer Science 2025-02-04 Chamalee Wickrama Arachchi , Iiro Kumpulainen , Nikolaj Tatti

We characterize regular string transductions as programs in a linear $\lambda$-calculus with additives. One direction of this equivalence is proved by encoding copyless streaming string transducers (SSTs), which compute regular functions,…

Logic in Computer Science · Computer Science 2023-04-06 Lê Thành Dũng Nguyên , Camille Noûs , Cécilia Pradic

Using Large Language Models (LLMs) to process graph-structured data is an active research area, yet current state-of-the-art approaches typically rely on multi-step pipelines with Graph Neural Network (GNN) encoders that compress rich…

Machine Learning · Computer Science 2026-05-12 Dario Vajda

The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with…

Computation and Language · Computer Science 2016-12-14 Jiacheng Xu , Kan Chen , Xipeng Qiu , Xuanjing Huang

Spatio-temporal graph neural networks have proven efficacy in capturing complex dependencies for urban computing tasks such as forecasting and kriging. Yet, their performance is constrained by the reliance on extensive data for training on…

Machine Learning · Computer Science 2024-11-08 Junfeng Hu , Xu Liu , Zhencheng Fan , Yifang Yin , Shili Xiang , Savitha Ramasamy , Roger Zimmermann

Multimodal knowledge graphs (MKGs), which intuitively organize information in various modalities, can benefit multiple practical downstream tasks, such as recommendation systems, and visual question answering. However, most MKGs are still…

Artificial Intelligence · Computer Science 2023-07-10 Ke Liang , Sihang Zhou , Yue Liu , Lingyuan Meng , Meng Liu , Xinwang Liu

Graph transformers typically lack third-order interactions, limiting their geometric understanding which is crucial for tasks like molecular geometry prediction. We propose the Triplet Graph Transformer (TGT) that enables direct…

Machine Learning · Computer Science 2025-09-10 Md Shamim Hussain , Mohammed J. Zaki , Dharmashankar Subramanian

Spiking Graph Networks (SGNs) have demonstrated significant potential in graph classification by emulating brain-inspired neural dynamics to achieve energy-efficient computation. However, existing SGNs are generally constrained to…

Machine Learning · Computer Science 2025-09-29 Yingxu Wang , Mengzhu Wang , Houcheng Su , Nan Yin , Quanming Yao , James Kwok

We introduce UNIST, the first deep neural implicit model for general-purpose, unpaired shape-to-shape translation, in both 2D and 3D domains. Our model is built on autoencoding implicit fields, rather than point clouds which represents the…

Computer Vision and Pattern Recognition · Computer Science 2022-03-31 Qimin Chen , Johannes Merz , Aditya Sanghi , Hooman Shayani , Ali Mahdavi-Amiri , Hao Zhang

Graph neural networks (GNNs) are the most widely adopted model in graph-structured data oriented learning and representation. Despite their extraordinary success in real-world applications, understanding their working mechanism by theory is…

Machine Learning · Computer Science 2023-05-16 Huayi Tang , Yong Liu

Graph Self-Supervised Learning (GSSL) has emerged as a powerful paradigm for generating high-quality representations for graph-structured data. While multi-scale graph contrastive learning has received increasing attention, many existing…

Machine Learning · Computer Science 2026-05-14 Mohamed Mahmoud Amar , Nairouz Mrabah , Mohamed Bouguessa , Abdoulaye Baniré Diallo

Graph Neural Networks (GNNs) have become a standard approach for learning from graph-structured data. However, their reliance on parametric classifiers (most often linear softmax layers) limits interpretability and sometimes hinders…

Machine Learning · Computer Science 2026-02-03 Zeljko Bolevic , Milos Brajovic , Isidora Stankovic , Ljubisa Stankovic

Graph is a fundamental data structure to model interconnections between entities. Set, on the contrary, stores independent elements. To learn graph representations, current Graph Neural Networks (GNNs) primarily use message passing to…

Machine Learning · Computer Science 2024-06-03 Xiyuan Wang , Pan Li , Muhan Zhang
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