Related papers: Matroids that classify forests
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
We investigate the complexity of counting trees, forests and bases of matroids from a parameterized point of view. It turns out that the problems of computing the number of trees and forests with $k$ edges are $\# W[1]$-hard when…
A new tree model is introduced based on ordered trees, by distinguishing exactly one child of each node that \emph{has} children. The basic enumeration leads to a cubic equation of the generating function. The extraction of its coefficients…
In this paper, we introduce the notion of Cartesian Forest, which generalizes Cartesian Trees, in order to deal with partially ordered sequences. We show that algorithms that solve both exact and approximate Cartesian Tree Matching can be…
In this short note, we find the number of forests of chord diagrams with a given number of trees and a given number of chords.
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
Classifying states as entangled or separable is a fundamental, but expensive task. This paper presents a method, the forest algorithm, to improve the amount of resources needed to detect entanglement. Starting from 'optimized' methods for…
An extension of order theory is presented that serves as a formalism for the study of dendroidal sets analogously to way the formalism of order theory is used in the study of simplicial sets.
We present a version of the matrix-tree theorem, which relates the determinant of a matrix to sums of weights of arborescences of its directed graph representation. Our treatment allows for non-zero column sums in the parent matrix by…
We construct the ordinary irreducible representations of the group of automorphisms of a finite rooted tree and we get a natural parametrization of them. To achieve this goals, we introduce and study the combinatorics of tree compositions,…
The relationship between two important problems in tree pattern matching, the largest common subtree and the smallest common supertree problems, is established by means of simple constructions, which allow one to obtain a largest common…
We explore from an algebraic viewpoint the properties of the tree languages definable with a first-order formula involving the ancestor predicate, using the description of these languages as those recognized by iterated block products of…
The Laplacian matrix of a graph $G$ is $L(G)=D(G)-A(G)$, where $A(G)$ is the adjacency matrix and $D(G)$ is the diagonal matrix of vertex degrees. According to the Matrix-Tree Theorem, the number of spanning trees in $G$ is equal to any…
Predicting the fate of ecologies is a daunting, albeit extremely important, task. As part of this task one needs to develop an understanding of the organization, hierarchies, and correlations among the species forming the ecology. Focusing…
An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…
The rank (also known as protection number or leaf-height) of a vertex in a rooted tree is the minimum distance between the vertex and any of its leaf descendants. We consider the sum of ranks over all vertices (known as the security) in…
We consider the problem of determining whether the union of two infinite matroids is a matroid. We introduce a superclass of the finitary matroids, the nearly finitary matroids, and prove that the union of two nearly finitary matroids is a…
The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…
For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…