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Graph motif, defined as the microstructure that appears repeatedly in a large graph, reveals important topological characteristics of the large graph and has gained increasing attention in power system analysis regarding reliability,…

Systems and Control · Electrical Eng. & Systems 2024-12-10 Yiyan Li , Zhenghao Zhou , Jian Ping , Xiaoyuan Xu , Zheng Yan , Jianzhong Wu

Combinatorial optimization problems near algorithmic phase transitions represent a fundamental challenge for both classical algorithms and machine learning approaches. Among them, graph coloring stands as a prototypical constraint…

In this paper, we consider distributed coloring for planar graphs with a small number of colors. We present an optimal (up to a constant factor) $O(\log{n})$ time algorithm for 6-coloring planar graphs. Our algorithm is based on a novel…

Data Structures and Algorithms · Computer Science 2018-04-03 Shiri Chechik , Doron Mukhtar

Motivated by applications in social and biological network analysis, we introduce a new form of agnostic clustering termed~\emph{motif correlation clustering}, which aims to minimize the cost of clustering errors associated with both edges…

Data Structures and Algorithms · Computer Science 2018-11-07 Pan Li , Gregory J. Puleo , Olgica Milenkovic

We consider the problem of minimizing the number of broadcasts for collecting all sensor measurements at a sink node in a noisy broadcast sensor network. Focusing first on arbitrary network topologies, we provide (i) fundamental limits on…

Information Theory · Computer Science 2017-02-01 Yaoqing Yang , Soummya Kar , Pulkit Grover

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

The mixing time of a graph is an important metric, which is not only useful in analyzing connectivity and expansion properties of the network, but also serves as a key parameter in designing efficient algorithms. We present an efficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-19 Anisur Rahaman Molla , Gopal Pandurangan

Sampling methods (e.g., node-wise, layer-wise, or subgraph) has become an indispensable strategy to speed up training large-scale Graph Neural Networks (GNNs). However, existing sampling methods are mostly based on the graph structural…

Machine Learning · Computer Science 2021-09-07 Weilin Cong , Rana Forsati , Mahmut Kandemir , Mehrdad Mahdavi

Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general…

Data Structures and Algorithms · Computer Science 2019-02-20 Martin Furer , Shiva Prasad Kasiviswanathan

Current quantum computing devices have different strengths and weaknesses depending on their architectures. This means that flexible approaches to circuit design are necessary. We address this task by introducing a novel space-efficient…

Counting the number of triangles in a graph has many important applications in network analysis. Several frequently computed metrics like the clustering coefficient and the transitivity ratio need to count the number of triangles in the…

Data Structures and Algorithms · Computer Science 2013-04-24 Mostafa Haghir Chehreghani

We present the first polynomial-time algorithm to exactly compute the number of labeled chordal graphs on $n$ vertices. Our algorithm solves a more general problem: given $n$ and $\omega$ as input, it computes the number of…

Data Structures and Algorithms · Computer Science 2024-10-04 Ursula Hebert-Johnson , Daniel Lokshtanov , Eric Vigoda

The problem of calculating the frequencies of network motifs on three and four nodes in large networks is considered. Telecommunications networks, cell molecular networks are investigated. The sizes of the investigated networks are hundreds…

Social and Information Networks · Computer Science 2020-01-08 M. N. Yudina , V. N. Zadorozhnyi , E. B. Yudin

We address the problem of distributed computation of arbitrary functions of two correlated sources $X_1$ and $X_2$, residing in two distributed source nodes, respectively. We exploit the structure of a computation task by coding source…

Information Theory · Computer Science 2025-04-23 Mohammad Reza Deylam Salehi , Derya Malak

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Graph partitioning is a key fundamental problem in the area of big graph computation. Previous works do not consider the practical requirements when optimizing the big data analysis in real applications. In this paper, motivated by…

Databases · Computer Science 2024-04-10 Baoling Ning , Jianzhong Li

Coloring unit-disk graphs efficiently is an important problem in the global and distributed setting, with applications in radio channel assignment problems when the communication relies on omni-directional antennas of the same power. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-23 Louis Esperet , Sébastien Julliot , Arnaud de Mesmay

A motif is a frequently occurring subgraph of a given directed or undirected graph $G$. Motifs capture higher order organizational structure of $G$ beyond edge relationships, and, therefore, have found wide applications such as in graph…

Data Structures and Algorithms · Computer Science 2022-09-13 Michael Kapralov , Mikhail Makarov , Sandeep Silwal , Christian Sohler , Jakab Tardos

As the popularity of graph data increases, there is a growing need to count the occurrences of subgraph patterns of interest, for a variety of applications. Many graphs are massive in scale and also fully dynamic (with insertions and…

Databases · Computer Science 2022-11-15 Kaixin Wang , Cheng Long , Da Yan , Jie Zhang , H. V. Jagadish

The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-26 Henning Meyerhenke , Peter Sanders , Christian Schulz
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