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Exploring statistics of locally connected subgraph patterns (also known as network motifs) has helped researchers better understand the structure and function of biological and online social networks (OSNs). Nowadays the massive size of…

Social and Information Networks · Computer Science 2014-03-28 Pinghui Wang , John C. S. Lui , Bruno Ribeiro , Don Towsley , Junzhou Zhao , Xiaohong Guan

Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…

Social and Information Networks · Computer Science 2015-02-25 Pinghui Wang , John C. S. Lui , Don Towsley

We introduce graph motif parameters, a class of graph parameters that depend only on the frequencies of constant-size induced subgraphs. Classical works by Lov\'asz show that many interesting quantities have this form, including, for fixed…

Data Structures and Algorithms · Computer Science 2017-05-05 Radu Curticapean , Holger Dell , Dániel Marx

Higher-order graph clustering aims to partition the graph using frequently occurring subgraphs. Motif conductance is one of the most promising higher-order graph clustering models due to its strong interpretability. However, existing motif…

Computational Complexity · Computer Science 2024-06-12 Longlong Lin , Tao Jia , Zeli Wang , Jin Zhao , Rong-Hua Li

Irregular computations on unstructured data are an important class of problems for parallel programming. Graph coloring is often an important preprocessing step, e.g. as a way to perform dependency analysis for safe parallel execution. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-19 Georgios Rokos , Gerard Gorman , Paul H J Kelly

Counting the number of occurrences of small connected subgraphs, called temporal motifs, has become a fundamental primitive for the analysis of temporal networks, whose edges are annotated with the time of the event they represent. One of…

Social and Information Networks · Computer Science 2021-08-20 Ilie Sarpe , Fabio Vandin

In this paper, we introduce a generalization of graphlets to heterogeneous networks called typed graphlets. Informally, typed graphlets are small typed induced subgraphs. Typed graphlets generalize graphlets to rich heterogeneous networks…

Social and Information Networks · Computer Science 2020-10-28 Ryan A. Rossi , Nesreen K. Ahmed , Aldo Carranza , David Arbour , Anup Rao , Sungchul Kim , Eunyee Koh

In this paper, we consider the problem of counting and sampling structures in graphs. We define a class of "edge universal labeling problems"---which include proper $k$-colorings, independent sets, and downsets---and describe simple…

Data Structures and Algorithms · Computer Science 2020-08-20 Christine T. Cheng , Will Rosenbaum

We present three quantum algorithms for clustering graphs based on higher-order patterns, known as motif clustering. One uses a straightforward application of Grover search, the other two make use of quantum approximate counting, and all of…

Quantum Physics · Physics 2023-07-05 Chris Cade , Farrokh Labib , Ido Niesen

Graph workloads pose a particularly challenging problem for query optimizers. They typically feature large queries made up of entirely many-to-many joins with complex correlations. This puts significant stress on traditional cardinality…

Databases · Computer Science 2025-05-01 Kyle Deeds , Diandre Sabale , Moe Kayali , Dan Suciu

We consider the subgraph isomorphism problem where, given two graphs G (source graph) and F (pattern graph), one is to decide whether there is a (not necessarily induced) subgraph of G isomorphic to F. While many practical heuristic…

Data Structures and Algorithms · Computer Science 2019-08-30 Josef Malík , Ondřej Suchý , Tomáš Valla

Graphlets are induced subgraphs of a large network and are important for understanding and modeling complex networks. Despite their practical importance, graphlets have been severely limited to applications and domains with relatively small…

Social and Information Networks · Computer Science 2017-03-01 Ryan A. Rossi , Rong Zhou , Nesreen K. Ahmed

Frequent and structurally related subgraphs, also known as network motifs, are valuable features of many graph datasets. However, the high computational complexity of identifying motif sets in arbitrary datasets (motif mining) has limited…

Machine Learning · Computer Science 2022-06-08 Carlos Oliver , Dexiong Chen , Vincent Mallet , Pericles Philippopoulos , Karsten Borgwardt

We propose a new type of approximate counting algorithms for the problems of enumerating the number of independent sets and proper colorings in low degree graphs with large girth. Our algorithms are not based on a commonly used Markov chain…

Probability · Mathematics 2007-05-23 Antar Bandyopadhyay , David Gamarnik

Identifying the underlying models in a set of data points contaminated by noise and outliers, leads to a highly complex multi-model fitting problem. This problem can be posed as a clustering problem by the projection of higher order…

Computer Vision and Pattern Recognition · Computer Science 2018-08-01 Ruwan Tennakoon , Alireza Sadri , Reza Hoseinnezhad , Alireza Bab-Hadiashar

Estimating the frequency of sub-graphs is of importance for many tasks, including sub-graph isomorphism, kernel-based anomaly detection, and network structure analysis. While multiple algorithms were proposed for full enumeration or…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-28 Itay Levinas , Roy Scherz , Yoram Louzoun

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

Network motif provides a way to uncover the basic building blocks of most complex networks. This task usually demands high computer processing, specially for motif with 5 or more vertices. This paper presents an extended methodology with…

Data Structures and Algorithms · Computer Science 2018-04-27 Luis A. A. Meira , Vinícius R. Máximo , Alvaro L. Fazenda , Arlindo F. da Conceição

Exploratory analysis over network data is often limited by the ability to efficiently calculate graph statistics, which can provide a model-free understanding of the macroscopic properties of a network. We introduce a framework for…

Methodology · Statistics 2020-04-17 Kirill Paramonov , Dmitry Shemetov , James Sharpnack