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Molecular simulations provide a powerful means to unravel the complex relationships between network architecture and the mechanical response of polymer networks, with a particular emphasis on rupture and fracture phenomena. Although…

Soft Condensed Matter · Physics 2026-02-02 Yuichi Masubuchi , Takato Ishida , Yusuke Koide , Takashi Uneyama

The coupled problems of selecting control nodes and designing control actions for nonlinear network dynamics are fundamental scientific problems with applications in many diverse fields. These problems are thoroughly studied for linear…

Systems and Control · Electrical Eng. & Systems 2020-08-25 Aleksandar Haber , Sebastian A. Nugroho , Patricio Torres , Ahmad F. Taha

Modeling and optimization of metabolic networks has been one of the hottest topics in computational systems biology within recent years. However, the complexity and uncertainty of these networks in addition to the lack of necessary data has…

Molecular Networks · Quantitative Biology 2014-07-01 Erfan Khaji , Mahsa Mortazavi

Data flow analysis and optimization is considered for homogeneous rectangular mesh networks. We propose a flow matrix equation which allows a closed-form characterization of the nature of the minimal time solution, speedup and a simple…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-30 Junwei Zhang , Yang Liu , Li Shi , Thomas G. Robertazzi

A fluid queuing network constitutes one of the simplest models in which to study flow dynamics over a network. In this model we have a single source-sink pair and each link has a per-time-unit capacity and a transit time. A dynamic…

Computer Science and Game Theory · Computer Science 2021-12-21 Roberto Cominetti , José Correa , Neil Olver

Many decision-making problems in engineering applications such as transportation, power system and operations research require repeatedly solving large-scale linear programming problems with a large number of different inputs. For example,…

Optimization and Control · Mathematics 2020-06-11 Yize Chen , Baosen Zhang

In this paper, we consider the optimal design of networked estimators to minimize the communication/measurement cost under the networked observability constraint. This problem is known as the minimum-cost networked estimation problem, which…

Systems and Control · Electrical Eng. & Systems 2019-11-27 Mohammadreza Doostmohammadian , Usman Khan

The gravity fed water distribution network design (WDND) optimization problem consists in determining the pipe diameters of a water network such that hydraulic constraints are satisfied and the total cost is minimized. Traditionally, such…

Artificial Intelligence · Computer Science 2021-12-28 Willian C. S. Martinho , Rafael A. Melo , Kenneth Sörensen

We propose a simple model to analyze the traffic of droplets in microfluidic ``dual networks''. Such functional networks which consist of two types of channels, namely those accessible or forbidden to droplets, often display a complex…

Fluid Dynamics · Physics 2008-01-30 M. Schindler , A. Ajdari

We study the dynamics of a simple adaptive system in the presence of noise and periodic damping. The system is composed by two paths connecting a source and a sink, the dynamics is governed by equations that usually describe food search of…

Statistical Mechanics · Physics 2021-12-23 Frederic Folz , Kurt Mehlhorn , Giovanna Morigi

Dynamic network flows, sometimes called flows over time, extend the notion of network flows to include a transit time for each edge. While Ford and Fulkerson showed that certain dynamic flow problems can be solved via a reduction to static…

Discrete Mathematics · Computer Science 2023-02-16 Thomas Bläsius , Adrian Feilhauer , Jannik Westenfelder

This article presents a detailed introduction to density-based topology optimisation of fluid flow problems. The goal is to allow new students and researchers to quickly get started in the research area and to skip many of the initial…

Computational Engineering, Finance, and Science · Computer Science 2023-02-03 Joe Alexandersen

Many discrete optimization problems are amenable to constrained shortest-path reformulations in an extended network space, a technique that has been key in convexification, bound strengthening, and search. In this paper, we propose a…

Optimization and Control · Mathematics 2024-07-09 Leonardo Lozano , David Bergman , Andre A. Cire

Cascade processes are responsible for many important phenomena in natural and social sciences. Simple models of irreversible dynamics on graphs, in which nodes activate depending on the state of their neighbors, have been successfully…

Disordered Systems and Neural Networks · Physics 2013-09-16 Fabrizio Altarelli , Alfredo Braunstein , Luca Dall'Asta , Riccardo Zecchina

Images of natural systems may represent patterns of network-like structure, which could reveal important information about the topological properties of the underlying subject. However, the image itself does not automatically provide a…

Computer Vision and Pattern Recognition · Computer Science 2021-09-03 Diego Baptista , Caterina De Bacco

Physics-based simulations are often used to model and understand complex physical systems and processes in domains like fluid dynamics. Such simulations, although used frequently, have many limitations which could arise either due to the…

Machine Learning · Computer Science 2019-11-12 Nikhil Muralidhar , Jie Bu , Ze Cao , Long He , Naren Ramakrishnan , Danesh Tafti , Anuj Karpatne

Numerous complex systems, both natural and artificial, are characterized by the presence of intertwined supply and/or drainage networks. Here we present a minimalist model of such co-evolving networks in a spatially continuous domain, where…

Adaptation and Self-Organizing Systems · Physics 2021-07-08 Shashank Kumar Anand , Milad Hooshyar , Jan Martin Nordbotten , Amilcare Porporato

A recent breakthrough in biologically-plausible normative frameworks for dimensionality reduction is based upon the similarity matching cost function and the low-rank matrix approximation problem. Despite clear biological interpretation,…

Neurons and Cognition · Quantitative Biology 2025-06-09 Veronica Centorrino , Francesco Bullo , Giovanni Russo

In this paper, we propose new algorithms for evacuation problems defined on dynamic flow networks. A dynamic flow network is a directed graph in which source nodes are given supplies (i.e., the number of evacuees) and a single sink node is…

Data Structures and Algorithms · Computer Science 2023-03-01 Yuya Higashikawa , Naoki Katoh , Junichi Teruyama , Yuki Tokuni

We suggest a global perspective on dynamic network flow problems that takes advantage of the similarities to port-Hamiltonian dynamics. Dynamic minimum cost flow problems are formulated as open-loop optimal control problems for general…

Optimization and Control · Mathematics 2023-09-06 Onur Tanil Doganay , Kathrin Klamroth , Bruno Lang , Michael Stiglmayr , Claudia Totzeck