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A dynamic self-organized morphology is the hallmark of network-shaped organisms like slime moulds and fungi. Organisms continuously re-organize their flexible, undifferentiated body plans to forage for food. Among these organisms the slime…

Biological Physics · Physics 2019-03-27 Karen Alim

Plasmodium of true slime mold, Physarum polycephalum, is an amoeboid organism, which spreads with developing tubular network structure and crawls on two-dimensional plane with oscillating the cell thickness. The plasmodium transforms its…

Adaptation and Self-Organizing Systems · Physics 2009-04-10 Yuki Kagawa , Atsuko Takamatsu

The user equilibrium in traffic assignment problem is based on the fact that travelers choose the minimum-cost path between every origin-destination pair and on the assumption that such a behavior will lead to an equilibrium of the traffic…

Artificial Intelligence · Computer Science 2014-06-10 Yang Liu , Xiaoge Zhang , Yong Deng

Very simple organisms, such as the single-celled amoeboid slime mould Physarum polycephalum possess no neural tissue yet, despite this, are known to exhibit complex biological and computational behaviour. Given such limited resources, can…

Emerging Technologies · Computer Science 2015-11-25 Jeff Jones

Life evolved organisms to adapt dynamically to their environment and autonomously exhibit behaviours. While complex behaviours in organisms are typically associated with the capability of neurons to process information, the unicellular…

Biological Physics · Physics 2023-06-16 Mathieu Le Verge-Serandour , Karen Alim

The slime mould Physarum polycephalum is a suitable candidate organism for soft-matter robotics because it exhibits controllable transport, movement and guidance behaviour. Physarum may be considered as a smart computing and actuating…

Adaptation and Self-Organizing Systems · Physics 2012-12-05 Soichiro Tsuda , Jeff Jones , Andrew Adamatzky

Consider a learning algorithm, which involves an internal call to an optimization routine such as a generalized eigenvalue problem, a cone programming problem or even sorting. Integrating such a method as a layer(s) within a trainable deep…

Machine Learning · Computer Science 2021-05-11 Zihang Meng , Sathya N. Ravi , Vikas Singh

Transshipment problem is one of the basic operational research problems. In this paper, our first work is to develop a biologically inspired mathematical model for a dynamical system, which is first used to solve minimum cost flow problem.…

Systems and Control · Computer Science 2014-01-13 Cai Gao , Chao Yan , Daijun Wei , Yong Hu , Sankaran Mahadevan , Yong Deng

Slime mould \emph{Physarum polycephalum} is a large single cell capable for distributed sensing, concurrent information processing, parallel computation and decentralised actuation. The ease of culturing and experimenting with Physarum…

Emerging Technologies · Computer Science 2015-12-29 Andrew Adamatzky

Plasmodium stage of Physarum polycephalum behaves as a distributed dynamical pattern formation mechanism who's foraging and migration is influenced by local stimuli from a wide range of attractants and repellents. Complex protoplasmic tube…

Biological Physics · Physics 2012-04-10 Soichiro Tsuda , Jeff Jones , Andrew Adamatzky , Jonathan Mills

In recent years, research on Physarum polycephalum has become more popular after Nakagaki et al. (2000) performed their famous experiment showing that Physarum was able to find the shortest route through a maze. Subsequent researches have…

Artificial Intelligence · Computer Science 2021-05-11 Abubakr Awad , Wei Pang , David Lusseau , George M. Coghill

Network-forming organisms, like fungi and slime molds, dynamically reorganize their networks during foraging. The resulting re-routing of resource flows within the organism's network can significantly impact local ecosystems. In current…

Biological Physics · Physics 2024-09-02 Lisa Schick , Mirna Kramar , Karen Alim

The slime mould Physarum polycephalum has emerged as a model for self-organisation and coordination of contractile activity at large spatial scales. This self-organisation largely results from cytoplasmic flows generated by propagating…

Soft Condensed Matter · Physics 2025-09-23 Raphael Saiseau , Valentin Busson , Marc Durand

Shortest path problems are a touchstone for evaluating the computing performance and functional range of novel computing substrates. Much has been published in recent years regarding the use of biocomputers to solve minimal path problems…

Emerging Technologies · Computer Science 2019-05-14 Richard Mayne

Slime mould of Physarum polycephalum is a large cell exhibiting rich spatial non-linear electrical characteristics. We exploit the electrical properties of the slime mould to implement logic gates using a flexible hardware platform designed…

Emerging Technologies · Computer Science 2016-07-11 Simon Harding , Jan Koutnik , Klaus Greff , Jurgen Schmidhuber , Andy Adamatzky

Physarum polycephalum is a large single amoeba cell, which in its plasmodial phase,forages and connects nearby food sources with protoplasmic tubes. The organism forages for food by growing these tubes towards detected food stuffs, this…

Emerging Technologies · Computer Science 2014-06-10 James G. H. Whiting , Ben P. J. de Lacy Costello , Andrew Adamatzky

The model organism Physarum polycephalum is known to perform decentralised problem solving despite absence of nervous system. Experimental evidence and modelling studies have linked these abilities, and in particular maze-solving, to some…

Biological Physics · Physics 2026-02-19 Daniele Proverbio , Giulia Giordano

The slime mould Physarum polycephalum has been used in developing unconventional computing devices for in which the slime mould played a role of a sensing, actuating, and computing device. These devices treated the slime mould rather as an…

The slime mould Physarum polycephalum is known to construct proto- plasmic transport networks which approximate proximity graphs by forag- ing for nutrients during its plasmodial life cycle stage. In these networks, nodes are represented by…

Emerging Technologies · Computer Science 2015-11-19 Jeff Jones , Richard Mayne , Andrew Adamatzky

This paper introduces Polyphorm, an interactive visualization and model fitting tool that provides a novel approach for investigating cosmological datasets. Through a fast computational simulation method inspired by the behavior of Physarum…

Instrumentation and Methods for Astrophysics · Physics 2020-09-08 Oskar Elek , Joseph N. Burchett , J. Xavier Prochaska , Angus G. Forbes