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In this paper we investigate the computational power of a set of mobile robots with limited visibility. At each iteration, a robot takes a snapshot of its surroundings, uses the snapshot to compute a destination point, and it moves toward…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-07 Giuseppe A. Di Luna , Paola Flocchini , Nicola Santoro , Giovanni Viglietta

Robotic manipulation can be formulated as inducing a sequence of spatial displacements: where the space being moved can encompass an object, part of an object, or end effector. In this work, we propose the Transporter Network, a simple…

In this work, we study theoretical models of \emph{programmable matter} systems. The systems under consideration consist of spherical modules, kept together by magnetic forces and able to perform two minimal mechanical operations (or…

Data Structures and Algorithms · Computer Science 2017-03-14 Othon Michail , George Skretas , Paul G. Spirakis

The theory of spin models intersects with condensed matter physics, complex systems, graph theory, combinatorial optimization, computational complexity and neural networks. Many ensuing applications rely on the fact that complicated spin…

Mathematical Physics · Physics 2024-08-02 Tobias Reinhart , Benjamin Engel , Gemma De les Coves

We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by…

Data Structures and Algorithms · Computer Science 2013-01-15 Damien Woods , Ho-Lin Chen , Scott Goodfriend , Nadine Dabby , Erik Winfree , Peng Yin

Traditional robotic mechanisms contain a series of rigid links connected by rotational joints that provide powered motion, all of which is controlled by a central processor. By contrast, analogous mechanisms found in nature, such as octopus…

Computational Engineering, Finance, and Science · Computer Science 2023-11-06 Anurag Bhattacharyya , Jin-Young Kim , Lee R. Alacoque , Kai A. James

Inspired by protein folding, we explored the construction of three-dimensional structures and machines from one-dimensional chains of simple building blocks. This approach not only allows us to recreate the self-replication mechanism…

Computation and Language · Computer Science 2024-08-15 Ralph P. Lano

We outline the construction of a molecular system that could, in principle, implement a thermodynamically reversible Universal Turing Machine (UTM). By proposing a concrete-albeit idealised-design and operational protocol, we reveal…

Statistical Mechanics · Physics 2021-02-09 Rory A. Brittain , Nick S. Jones , Thomas E. Ouldridge

We study the power of uncontrolled random molecular movement in the nubot model of self-assembly. The nubot model is an asynchronous nondeterministic cellular automaton augmented with rigid-body movement rules (push/pull, deterministically…

Data Structures and Algorithms · Computer Science 2014-09-18 Ho-Lin Chen , David Doty , Dhiraj Holden , Chris Thachuk , Damien Woods , Chun-Tao Yang

The linearization of the equations of motion of a robotics system about a given state-input trajectory, including a controlled equilibrium state, is a valuable tool for model-based planning, closed-loop control, gain tuning, and state…

Robotics · Computer Science 2022-04-20 Martijn Bos , Silvio Traversaro , Daniele Pucci , Alessandro Saccon

An open problem in applied mathematics is to predict interesting molecules which are realistic targets for chemical synthesis. In this paper, we use a spin Hamiltonian-type model to predict molecular magnets (MMs) with magnetic moments that…

A new model for mechanical computing is demonstrated that requires only two basic parts: links and rotary joints. These basic parts are combined into two main higher level structures: locks and balances, which suffice to create all…

Emerging Technologies · Computer Science 2019-03-27 Ralph C. Merkle , Robert A. Freitas , Tad Hogg , Thomas E. Moore , Matthew S. Moses , James Ryley

We investigate computational issues in the distributed model Amoebots of programmable matter. In this model, the computational entities, called particles, are anonymous finite-state machines that operate and move on an hexagonal tasselation…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-01 Giuseppe Antonio Di Luna , Paola Flocchini , Nicola Santoro , Giovanni Viglietta , Yukiko Yamauchi

We introduce machine learning models of quantum mechanical observables of atoms in molecules. Instant out-of-sample predictions for proton and carbon nuclear chemical shifts, atomic core level excitations, and forces on atoms reach…

Chemical Physics · Physics 2015-08-26 Matthias Rupp , Raghunathan Ramakrishnan , O. Anatole von Lilienfeld

Many biological functions are executed by molecular machines, which consume energy and convert it into mechanical work. Biological machines have evolved to transport cargo, facilitate folding of proteins and RNA, remodel chromatin and…

Biological Physics · Physics 2020-04-15 Mauro L. Mugnai , Changbong Hyeon , Michael Hinczewski , D. Thirumalai

We study a model of programmable matter systems consisting of $n$ devices lying on a 2-dimensional square grid, which are able to perform the minimal mechanical operation of rotating around each other. The goal is to transform an initial…

Data Structures and Algorithms · Computer Science 2022-07-08 Matthew Connor , Othon Michail

This research proposes a novel morphing structure with shells inspired by the movement of pillbugs. Instead of the pillbug body, a loopcoupled mechanism based on slider-crank mechanisms is utilized to achieve the rolling up and spreading…

Robotics · Computer Science 2025-06-06 Jieyu Wang , Yingzhong Tian , Fengfeng Xi , Damien Chablat , Jianing Lin , Gaoke Ren , Yinjun Zhao

One of basic difficulties of machine learning is handling unknown rotations of objects, for example in image recognition. A related problem is evaluation of similarity of shapes, for example of two chemical molecules, for which direct…

Machine Learning · Computer Science 2018-01-04 Jarek Duda

Learning from nature's amazing molecular machines, globular proteins, we present a framework for the predictive design of nano-machines. We show that the crucial ingredients for a chain molecule to behave as a machine are its inherent…

Soft Condensed Matter · Physics 2015-05-13 Jayanth R. Banavar , Marek Cieplak , Trinh Xuan Hoang , Amos Maritan

Unlike vision and language data which usually has a unique format, molecules can naturally be characterized using different chemical formulations. One can view a molecule as a 2D graph or define it as a collection of atoms located in a 3D…

Machine Learning · Computer Science 2023-03-29 Shengjie Luo , Tianlang Chen , Yixian Xu , Shuxin Zheng , Tie-Yan Liu , Liwei Wang , Di He
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