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The NuCLS dataset contains over 220.000 annotations of cell nuclei in breast cancers. We show how to use these data to create a multi-rater model with the MIScnn Framework to automate the analysis of cell nuclei. For the model creation, we…
We implement the de-excitation processes of residual nuclei associated with proton decays in $^{12} {\rm C}$ based on the GENIE generator and TALYS code. To derive the reasonable excitation energy spectra of residual nuclei $^{11} {\rm B}$,…
We present Sigma Web interface which provides user-friendly access for online analysis and plotting of the evaluated and experimental nuclear reaction data stored in the ENDF-6 and EXFOR formats. The interface includes advanced browsing and…
An early-stage version of simulation package is developed for electronic structure calculation and dynamics of atom process in large-scale systems, particularly, nm-scale or 10nm-scale systems. We adopted the Extensible Markup Language…
Modern astrophysical studies rely heavily on complex data analysis pipelines; however, published descriptions often lack the detail required for computational reproducibility. In this work, we present an information-theoretic framework to…
We present an introduction to some concepts of Bayesian data analysis in the context of atomic physics. Starting from basic rules of probability, we present the Bayes' theorem and its applications. In particular we discuss about how to…
Pipelined algorithms implemented in field programmable gate arrays are being extensively used for hardware triggers in the modern experimental high energy physics field and the complexity of such algorithms are increases rapidly. For…
Scientific data are widely dispersed across research articles and are often reported inconsistently across text, tables, and figures, making manual data extraction and aggregation slow and error-prone. We present a prompt-driven,…
Recent efforts for the improvement of the accuracy of physics data libraries used in particle transport are summarized. Results are reported about a large scale validation analysis of atomic parameters used by major Monte Carlo systems…
Model defects are known to cause biased nuclear data evaluations if they are not taken into account in the evaluation procedure. We suggest a method to construct prior distributions for model defects for reaction models using neighboring…
The rapid advancements in LLMs have driven the adoption of generative AI in various domains, including Electronic Design Automation (EDA). Unlike traditional software development, EDA presents unique challenges, as generated RTL code must…
As artificial intelligence advances, large language models (LLMs) are entering qualitative research workflows, yet no reproducible methods exist for integrating them into established approaches like thematic analysis (TA), one of the most…
The arrival of recent cybersecurity standards has raised the bar for security assessments in organizations, but existing techniques don't always scale well. Threat analysis and risk assessment are used to identify security threats for new…
The rise of big data systems has created a need for benchmarks to measure and compare the capabilities of these systems. Big data benchmarks present unique scalability challenges. The supercomputing community has wrestled with these…
This paper describes a localized algorithm for the topological simplification of scalar data, an essential pre-processing step of topological data analysis (TDA). Given a scalar field f and a selection of extrema to preserve, the proposed…
As part of an on-going effort to simplify the data analysis path for VLBI experiments, a pipeline procedure has been developed at JIVE to carry out much of the data reduction required for EVN experiments in an automated fashion. This…
With the growing popularity of Large Reasoning Models and their results in solving mathematical problems, it becomes crucial to measure their capabilities. We introduce a pipeline for both automatic and interactive verification as a more…
We present Pipe3D, an analysis pipeline based on the FIT3D fitting tool, devel- oped to explore the properties of the stellar populations and ionized gas of Integral Field Spectroscopy data. Pipe3D was created to provide with coherent,…
We describe the validation of the HERA Phase I software pipeline by a series of modular tests, building up to an end-to-end simulation. The philosophy of this approach is to validate the software and algorithms used in the Phase I upper…
An approach for incorporating embedded simulation and analysis capabilities in complex simulation codes through template-based generic programming is presented. This approach relies on templating and operator overloading within the C++…