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We present a unified framework for accelerating edit-distance computation between two compressible strings using straight-line programs. For two strings of total length $N$ having straight-line program representations of total size $n$, we…

Computational Complexity · Computer Science 2009-02-17 Danny Hermelin , Gad M. Landau , Shir Landau , Oren Weimann

Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…

Data Structures and Algorithms · Computer Science 2016-04-26 Carl Barton , Costas S. Iliopoulos , Solon P. Pissis

Let $A(n,d)$ be the maximum number of $0,1$ words of length $n$, any two having Hamming distance at least $d$. We prove $A(20,8)=256$, which implies that the quadruply shortened Golay code is optimal. Moreover, we show $A(18,6)\leq 673$,…

Combinatorics · Mathematics 2010-05-28 Dion C. Gijswijt , Hans D. Mittelmann , Alexander Schrijver

Kolmogorov argued that the concept of information exists also in problems with no underlying stochastic model (as Shannon's information representation) for instance, the information contained in an algorithm or in the genome. He introduced…

Discrete Mathematics · Computer Science 2008-07-01 Joel Ratsaby

Symmetry of information establishes a relation between the information that x has about y (denoted I(x : y)) and the information that y has about x (denoted I(y : x)). In classical information theory, the two are exactly equal, but in…

Information Theory · Computer Science 2012-06-25 Marius Zimand

Given a finite metric space $(V,d)$, an approximate distance oracle is a data structure which, when queried on two points $u,v \in V$, returns an approximation to the the actual distance between $u$ and $v$ which is within some bounded…

Data Structures and Algorithms · Computer Science 2016-12-19 Michael Dinitz , Zeyu Zhang

Ahlswede and Katona (1977) posed the following isodiametric problem in Hamming spaces: For every $n$ and $1\le M\le2^{n}$, determine the minimum average Hamming distance of binary codes with length $n$ and size $M$. Fu, Wei, and Yeung…

Combinatorics · Mathematics 2019-10-22 Lei Yu , Vincent Y. F. Tan

We show that real-value approximations of Kolmogorov-Chaitin (K_m) using the algorithmic Coding theorem as calculated from the output frequency of a large set of small deterministic Turing machines with up to 5 states (and 2 symbols), is in…

Information Theory · Computer Science 2013-12-12 Fernando Soler-Toscano , Hector Zenil , Jean-Paul Delahaye , Nicolas Gauvrit

The logical depth with significance $b$ of a finite binary string $x$ is the shortest running time of a binary program for $x$ that can be compressed by at most $b$ bits. There is another definition of logical depth. We give two theorems…

Computational Complexity · Computer Science 2013-10-28 L. Antunes , A. Souto , P. M. B. Vitanyi

Depth of an object concerns a tradeoff between computation time and excess of program length over the shortest program length required to obtain the object. It gives an unconditional lower bound on the computation time from a given program…

Computational Complexity · Computer Science 2008-09-16 Luis Antunes , Armando Matos , Andre Souto , Paul Vitanyi

In many applications, it is necessary to determine the string similarity. Edit distance[WF74] approach is a classic method to determine Field Similarity. A well known dynamic programming algorithm [GUS97] is used to calculate edit distance…

Data Structures and Algorithms · Computer Science 2007-05-23 Qi Xiao Yang , Sung Sam Yuan , Lu Chun , Li Zhao , Sun Peng

With the growing focus on semantic searches and interpretations, an increasing number of standardized vocabularies and ontologies are being designed and used to describe data. We investigate the querying of objects described by a…

Databases · Computer Science 2010-03-09 Arnab Bhattacharya , Abhishek Bhowmick , Ambuj K. Singh

Let \({\mathbb K}\) be any field, let \(X\subset {\mathbb P}^{k-1}\) be a set of \(n\) distinct \({\mathbb K}\)-rational points, and let \(a\geq 1\) be an integer. In this paper we find lower bounds for the minimum distance \(d(X)_a\) of…

Commutative Algebra · Mathematics 2024-04-16 John Pawlina , Stefan Tohaneanu

We show that the mutual information, in the sense of Kolmogorov complexity, of any pair of strings $x$ and $y$ is equal, up to logarithmic precision, to the length of the longest shared secret key that two parties, one having $x$ and the…

Information Theory · Computer Science 2019-04-30 Andrei Romashchenko , Marius Zimand

We define the distance between two information structures as the largest possible difference in value across all zero-sum games. We provide a tractable characterization of distance and use it to discuss the relation between the value of…

Optimization and Control · Mathematics 2021-09-20 Fabien Gensbittel , Marcin Peski , Jérôme Renault

Computing the minimum distance of a linear code is one of the fundamental problems in algorithmic coding theory. Vardy [14] showed that it is an \np-hard problem for general linear codes. In practice, one often uses codes with additional…

Information Theory · Computer Science 2015-01-08 Jiyou Li , Daqing Wan , Jun Zhang

We refer to the distance between optimal solutions of integer programs and their linear relaxations as proximity. In 2018, Eisenbrand and Weismantel proved that proximity is independent of the dimension for programs in standard form. We…

Optimization and Control · Mathematics 2020-01-15 Jon Lee , Joseph Paat , Ingo Stallknecht , Luze Xu

The edit distance is a metric of dissimilarity between strings, widely applied in computational biology, speech recognition, and machine learning. Let $e_k(n)$ denote the average edit distance between random, independent strings of $n$…

Formal Languages and Automata Theory · Computer Science 2024-04-09 Gianfranco Bilardi , Michele Schimd

For a finite binary string $x$ its logical depth $d$ for significance $b$ is the shortest running time of a program for $x$ of length $K(x)+b$. There is another definition of logical depth. We give a new proof that the two versions are…

Computational Complexity · Computer Science 2013-07-08 L. Antunes , A. Souto , A. Teixeira , P. M. B. Vitanyi

Given an LZW/LZ78 compressed text, we want to find an approximate occurrence of a given pattern of length m. The goal is to achieve time complexity depending on the size n of the compressed representation of the text instead of its length.…

Data Structures and Algorithms · Computer Science 2013-09-23 Pawel Gawrychowski , Damian Straszak