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Magnetic resonance imaging (MRI) is a crucial medical imaging modality. However, long acquisition times remain a significant challenge, leading to increased costs, and reduced patient comfort. Recent studies have shown the potential of…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Amirmohammad Shamaei , Alexander Stebner , Salome , Bosshart , Johanna Ospel , Gouri Ginde , Mariana Bento , Roberto Souza

Missing scans are inevitable in longitudinal studies due to either subject dropouts or failed scans. In this paper, we propose a deep learning framework to predict missing scans from acquired scans, catering to longitudinal infant studies.…

Image and Video Processing · Electrical Eng. & Systems 2022-08-10 Yunzhi Huang , Sahar Ahmad , Luyi Han , Shuai Wang , Zhengwang Wu , Weili Lin , Gang Li , Li Wang , Pew-Thian Yap

Image reconstruction using deep learning algorithms offers improved reconstruction quality and lower reconstruction time than classical compressed sensing and model-based algorithms. Unfortunately, clean and fully sampled ground-truth data…

Computer Vision and Pattern Recognition · Computer Science 2022-12-05 Hemant Kumar Aggarwal , Aniket Pramanik , Maneesh John , Mathews Jacob

The reconstruction of human visual inputs from brain activity, particularly through functional Magnetic Resonance Imaging (fMRI), holds promising avenues for unraveling the mechanisms of the human visual system. Despite the significant…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Yujian Xiong , Wenhui Zhu , Zhong-Lin Lu , Yalin Wang

In this work we reduce undersampling artefacts in two-dimensional ($2D$) golden-angle radial cine cardiac MRI by applying a modified version of the U-net. We train the network on $2D$ spatio-temporal slices which are previously extracted…

Image and Video Processing · Electrical Eng. & Systems 2019-08-14 Andreas Kofler , Marc Dewey , Tobias Schaeffter , Christian Wald , Christoph Kolbitsch

In this work, we explore the potential of self-supervised learning with Generative Adversarial Networks (GANs) for electron microscopy datasets. We show how self-supervised pretraining facilitates efficient fine-tuning for a spectrum of…

Computer Vision and Pattern Recognition · Computer Science 2024-07-19 Bashir Kazimi , Karina Ruzaeva , Stefan Sandfeld

The ability of deep image prior (DIP) to recover high-quality images from incomplete or corrupted measurements has made it popular in inverse problems in image restoration and medical imaging including magnetic resonance imaging (MRI).…

Computer Vision and Pattern Recognition · Computer Science 2024-02-09 Shijun Liang , Evan Bell , Qing Qu , Rongrong Wang , Saiprasad Ravishankar

The main focus of this work is a novel framework for the joint reconstruction and segmentation of parallel MRI (PMRI) brain data. We introduce an image domain deep network for calibrationless recovery of undersampled PMRI data. The proposed…

Image and Video Processing · Electrical Eng. & Systems 2021-02-03 Aniket Pramanik , Mathews Jacob

Reconstructing high-quality images from substantially undersampled k-space data for accelerated MRI presents a challenging ill-posed inverse problem. While supervised deep learning has revolutionized this field, it relies heavily on large…

Image and Video Processing · Electrical Eng. & Systems 2025-12-22 Xinzhe Luo , Yingzhen Li , Chen Qin

Deep learning approaches have shown promising performance for compressed sensing-based Magnetic Resonance Imaging. While deep neural networks trained with mean squared error (MSE) loss functions can achieve high peak signal to noise ratio,…

Computer Vision and Pattern Recognition · Computer Science 2018-07-02 Maximilian Seitzer , Guang Yang , Jo Schlemper , Ozan Oktay , Tobias Würfl , Vincent Christlein , Tom Wong , Raad Mohiaddin , David Firmin , Jennifer Keegan , Daniel Rueckert , Andreas Maier

Multi-contrast MRI sequences allow for the acquisition of images with varying tissue contrast within a single scan. The resulting multi-contrast images can be used to extract quantitative information on tissue microstructure. To make such…

Image and Video Processing · Electrical Eng. & Systems 2025-09-08 Natascha Niessen , Carolin M. Pirkl , Ana Beatriz Solana , Hannah Eichhorn , Veronika Spieker , Wenqi Huang , Tim Sprenger , Marion I. Menzel , Julia A. Schnabel

Deep learning (DL) based unrolled reconstructions have shown state-of-the-art performance for under-sampled magnetic resonance imaging (MRI). Similar to compressed sensing, DL can leverage high-dimensional data (e.g. 3D, 2D+time, 3D+time)…

Image and Video Processing · Electrical Eng. & Systems 2021-03-09 Ke Wang , Michael Kellman , Christopher M. Sandino , Kevin Zhang , Shreyas S. Vasanawala , Jonathan I. Tamir , Stella X. Yu , Michael Lustig

Using single-task deep learning methods to reconstruct Magnetic Resonance Imaging (MRI) data acquired with different imaging sequences is inherently challenging. The trained deep learning model typically lacks generalizability, and the…

Image and Video Processing · Electrical Eng. & Systems 2024-04-23 Wanyu Bian , Albert Jang , Fang Liu

Accelerated MRI shortens acquisition time by subsampling in the measurement $\kappa$-space. Recovering a high-fidelity anatomical image from subsampled measurements requires close cooperation between two components: (1) a sampler that…

Image and Video Processing · Electrical Eng. & Systems 2022-07-28 Tianwei Yin , Zihui Wu , He Sun , Adrian V. Dalca , Yisong Yue , Katherine L. Bouman

One of the key limitations in conventional deep learning based image reconstruction is the need for registered pairs of training images containing a set of high-quality groundtruth images. This paper addresses this limitation by proposing a…

Image and Video Processing · Electrical Eng. & Systems 2020-09-30 Weijie Gan , Yu Sun , Cihat Eldeniz , Jiaming Liu , Hongyu An , Ulugbek S. Kamilov

Purpose: Inversion recovery prepared ultra-short echo time (IR-UTE)-based MRI enables radiation-free visualization of osseous tissue. However, sufficient signal-to-noise ratio (SNR) can only be obtained with long acquisition times. This…

In compressed sensing MRI (CS-MRI), k-space measurements are under-sampled to achieve accelerated scan times. CS-MRI presents two fundamental problems: (1) where to sample and (2) how to reconstruct an under-sampled scan. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2020-07-01 Cagla D. Bahadir , Alan Q. Wang , Adrian V. Dalca , Mert R. Sabuncu

The goal of MRI reconstruction is to restore a high fidelity image from partially observed measurements. This partial view naturally induces reconstruction uncertainty that can only be reduced by acquiring additional measurements. In this…

Computer Vision and Pattern Recognition · Computer Science 2019-02-11 Zizhao Zhang , Adriana Romero , Matthew J. Muckley , Pascal Vincent , Lin Yang , Michal Drozdzal

Objective: Acquiring fully sampled training data is challenging for many MRI applications. We present a self-supervised image reconstruction method, termed ReSiDe, capable of recovering images solely from undersampled data. Materials and…

Image and Video Processing · Electrical Eng. & Systems 2024-11-26 Muhammad Shafique , Sizhuo Liu , Philip Schniter , Rizwan Ahmad

Purpose: To allow fast and high-quality reconstruction of clinical accelerated multi-coil MR data by learning a variational network that combines the mathematical structure of variational models with deep learning. Theory and Methods:…

Computer Vision and Pattern Recognition · Computer Science 2017-04-04 Kerstin Hammernik , Teresa Klatzer , Erich Kobler , Michael P Recht , Daniel K Sodickson , Thomas Pock , Florian Knoll