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The deformations of flagella are important in the motility of single- and multi-flagellated bacteria. Existing numerical methods have treated flagella as extensible filaments with a large extensional modulus, resulting in a stiff numerical…

Fluid Dynamics · Physics 2020-07-15 Mehdi Jabbarzadeh , Henry C. Fu

We present a generalisation of efficient numerical frameworks for modelling fluid-filament interactions via the discretisation of a recently-developed, non-local integral equation formulation to incorporate regularised Stokeslets with…

Fluid Dynamics · Physics 2019-10-02 Benjamin J. Walker , Kenta Ishimoto , Hermes Gadêlha , Eamonn A. Gaffney

Slender-body approximations have been successfully used to explain many phenomena in low-Reynolds number fluid mechanics. These approximations typically use a line of singularity solutions to represent the flow. These singularities can be…

Fluid Dynamics · Physics 2021-09-17 Boan Zhao , Lyndon Koens

Buckling plays a critical role in the transport and dynamics of elastic microfilaments in Stokesian fluids. However, previous work has only considered filaments with homogeneous structural properties. Filament backbone stiffness can be…

Soft Condensed Matter · Physics 2023-01-20 Thomas Nguyen , Harishankar Manikantan

The dynamics of geometrically non-linear flexible filaments play an important role in a host of biological processes, from flagella-driven cell transport to the polymeric structure of complex fluids. Such problems have historically been…

Fluid-structure simulations of slender inextensible filaments in a viscous fluid are often plagued by numerical stiffness. Recent coarse-graining studies have reduced the computational requirements of simulating such systems, though have…

Fluid Dynamics · Physics 2021-01-04 Benjamin J. Walker , Kenta Ishimoto , Eamonn A. Gaffney

Slender structures are ubiquitous in biological and physical systems, from bacterial flagella to soft robotic arms. The Cosserat rod provides a mathematical framework for slender bodies that can stretch, shear, twist and bend. In viscous…

Soft Condensed Matter · Physics 2025-10-22 Mingjia Yan , Mohamed Warda , Balázs Németh , Lukas Kikuchi , Ronojoy Adhikari

Active deformable filaments exhibit a large range of qualitatively different three-dimensional dynamics, depending on their flexibility, the strength and nature of the active forcing, and the surrounding environment. We investigate the…

The macroscopic properties of polymeric fluids are inherited from the material properties of the fibers embedded in the solvent. The behavior of such passive fibers in flow has been of interest in a wide range of systems, including cellular…

Soft Condensed Matter · Physics 2019-06-20 John LaGrone , Ricardo Cortez , Wen Yan , Lisa Fauci

We propose a novel integral model describing the motion of curved slender fibers in viscous flow, and develop a numerical method for simulating dynamics of rigid fibers. The model is derived from nonlocal slender body theory (SBT), which…

Fluid Dynamics · Physics 2021-11-24 Helge I. Andersson , Elena Celledoni , Laurel Ohm , Brynjulf Owren , Benjamin K. Tapley

Every animal cell is filled with a cytoskeleton, a dynamic gel made of inextensible fibers, such as microtubules, actin fibers, and intermediate filaments, all suspended in a viscous fluid. Numerical simulation of this gel is challenging…

Numerical Analysis · Mathematics 2021-01-20 Ondrej Maxian , Alex Mogilner , Aleksandar Donev

Elastic confinements play an important role in many soft matter systems and affect the transport properties of suspended particles in viscous flow. On the basis of low-Reynolds-number hydrodynamics, we present an analytical theory of the…

Fluid Dynamics · Physics 2019-04-12 Abdallah Daddi-Moussa-Ider , Badr Kaoui , Hartmut Löwen

We consider a classical elastohydrodynamic model of an inextensible filament undergoing planar motion in $\mathbb{R}^3$. The hydrodynamics are described by resistive force theory, and the fiber elasticity is governed by Euler-Bernoulli beam…

Analysis of PDEs · Mathematics 2023-02-22 Yoichiro Mori , Laurel Ohm

The dynamics of a flexible filament sedimenting in a viscous fluid are explored analytically and numerically. Compared to the well-studied case of sedimenting rigid rods, the introduction of filament compliance is shown to cause a…

Fluid Dynamics · Physics 2013-11-04 Lei Li , Harishankar Manikantan , David Saintillan , Saverio E. Spagnolie

Actuating periodically an elastic filament in a viscous liquid generally breaks the constraints of Purcell's scallop theorem, resulting in the generation of a net propulsive force. This observation suggests a method to design simple…

Soft Condensed Matter · Physics 2009-09-29 Eric Lauga

A new slender-body theory for viscous flow, based on the concepts of dimensional reduction and hyperviscous regularization, is presented. The geometry of flat, elongated, or point-like rigid bodies immersed in a viscous fluid is…

Fluid Dynamics · Physics 2016-03-23 Giulio G. Giusteri , Eliot Fried

We remark on the use of regularized Stokeslets in the slender body theory (SBT) approximation of Stokes flow about a thin fiber of radius $\epsilon>0$. Denoting the regularization parameter by $\delta$, we consider regularized SBT based on…

Fluid Dynamics · Physics 2021-06-16 Laurel Ohm

An interfacial regularized Stokeslet scheme is presented to predict the motion of solid bodies (e.g. proteins or gel-phase domains) embedded within flowing lipid bilayer membranes. The approach provides a numerical route to calculate…

Biological Physics · Physics 2019-10-23 Brian A. Camley , Frank L. H. Brown

Filaments are ubiquitous within the microscopic world. They occur frequently in both biological and industrial environments and display varied and rich dynamics. Their wide range of applications has spurred the development of a special…

Fluid Dynamics · Physics 2023-03-31 Lyndon Koens , Benjamin J. Walker

Many cells exploit the bending or rotation of flagellar filaments in order to self-propel in viscous fluids. While appropriate theoretical modelling is available to capture flagella locomotion in simple, Newtonian fluids, formidable…

Biological Physics · Physics 2017-08-02 Emily E. Riley , Eric Lauga
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