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The SARS-CoV-2 virus and COVID-19 disease have posed unprecedented and overwhelming demand, challenges and opportunities to domain, model and data driven modeling. This paper provides a comprehensive review of the challenges, tasks,…

Computers and Society · Computer Science 2021-08-05 Longbing Cao , Qing Liu

In this paper, we estimate the seroprevalence against COVID-19 by country and derive the seroprevalence over the world. To estimate seroprevalence, we use serological surveys (also called the serosurveys) conducted within each country. When…

Applications · Statistics 2022-02-01 Kwangmin Lee , Seongmin Kim , Seongil Jo , Jaeyong Lee

The reproductive number R_0 (and its value after initial disease emergence R) has long been used to predict the likelihood of pathogen invasion, to gauge the potential severity of an epidemic, and to set policy around interventions.…

Populations and Evolution · Quantitative Biology 2020-06-29 Clara L. Shaw , David A. Kennedy

With the global spread and increasing transmission rate of SARS-CoV-2, more and more laboratories and researchers are turning their attention to wastewater-based epidemiology (WBE), hoping it can become an effective tool for large-scale…

The question of how SARS-CoV-2 is transmitted remains surprisingly controversial today, especially with reference to airborne transmission. In fact, despite a large body of scientific evidence, health and regulatory authorities still…

Medical Physics · Physics 2021-10-07 G. Buonanno , A. Robotto , E. Brizio , L. Morawska , A. Civra , F. Corino , D. Lembo , G. Ficco , L. Stabile

During 2020, the infection rate of COVID-19 has been investigated by many scholars from different research fields. In this context, reliable and interpretable forecasts of disease incidents are a vital tool for policymakers to manage…

Machine Learning · Computer Science 2021-01-05 Cornelius Fritz , Emilio Dorigatti , David Rügamer

We develop a statistical model for the testing of disease prevalence in a population. The model assumes a binary test result, positive or negative, but allows for biases in sample selection and both type I (false positive) and type II…

Applications · Statistics 2021-12-28 Lucas Böttcher , Maria R. D'Orsogna , Tom Chou

Monitoring the incidence of new infections during a pandemic is critical for an effective public health response. General population prevalence surveys for SARS-CoV-2 can provide high-quality data to estimate incidence. However, estimation…

Analyzing large datasets and summarizing it into useful information is the heart of the data mining process. In healthcare, information can be converted into knowledge about patient historical patterns and possible future trends. During the…

Machine Learning · Computer Science 2024-12-02 Dheeman Saha , Aaron Segura , Biraj Tiwari

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes the coronavirus disease 2019 (COVID-19), has led to the deepest global health and economic crisis of the current century. This dramatic situation has forced the…

Applications · Statistics 2021-10-22 Álvaro Briz-Redón , Ángel Serrano-Aroca

There is a near consensus view that SARS-CoV-2 has a natural zoonotic origin; however, several characteristics of SARS-CoV-2 taken together are not easily explained by a natural zoonotic origin hypothesis. These include: a low rate of…

Populations and Evolution · Quantitative Biology 2021-02-10 Rossana Segreto , Yuri Deigin , Kevin McCairn , Alejandro Sousa , Dan Sirotkin , Karl Sirotkin , Jonathan J. Couey , Adrian Jones , Daoyu Zhang

Coronavirus disease 2019 (COVID-19) is the highly contagious illness caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The standard diagnostic testing procedure for COVID-19 is testing a nasopharyngeal swab for…

Image and Video Processing · Electrical Eng. & Systems 2021-10-14 Vishal Shenoy , Sachin B. Malik

We estimate the reduction in transmission of SARS-CoV-2 achievable by surveillance testing of a susceptible population at different frequencies, comparing the cases of both the original Wuhan strain and the Delta variant. We estimate the…

Physics and Society · Physics 2021-10-04 Ahmed Elbanna , Nigel Goldenfeld

There is a growing interest in modeling and analyzing the spread of diseases like the SARS-CoV-2 infection using stochastic models. These models are typically analyzed quantitatively and are not often subject to validation using formal…

Populations and Evolution · Quantitative Biology 2022-11-02 Marco Roveri , Franc Ivankovic , Luigi Palopoli , Daniele Fontanelli

The recent outbreak of COVID-19 has led to urgent needs for reliable diagnosis and management of SARS-CoV-2 infection. As a complimentary tool, chest CT has been shown to be able to reveal visual patterns characteristic for COVID-19, which…

COVID-19 has caused thousands of deaths around the world and also resulted in a large international economic disruption. Identifying the pathways associated with this illness can help medical researchers to better understand the properties…

Computation and Language · Computer Science 2022-05-03 Negin Karisani , Daniel E. Platt , Saugata Basu , Laxmi Parida

During its first two years, the SARS-CoV-2 pandemic manifested as multiple waves shaped by complex interactions between variants of concern, non-pharmaceutical interventions, and the immunological landscape of the population. Understanding…

Physics and Society · Physics 2022-12-29 Otilia Boldea , Amir Alipoor , Sen Pei , Jeffrey Shaman , Ganna Rozhnova

Effective visualizations were evaluated to reveal relevant health patterns from multi-sensor real-time wearable devices that recorded vital signs from patients admitted to hospital with COVID-19. Furthermore, specific challenges associated…

Human-Computer Interaction · Computer Science 2022-01-20 Susanne K. Suter , Georg R. Spinner , Bianca Hoelz , Sofia Rey , Sujeanthraa Thanabalasingam , Jens Eckstein , Sven Hirsch

The COVID-19 pandemic has profoundly affected global health, driven by the remarkable transmissibility and mutational adaptability of the SARS-CoV-2 virus. Although five variants of concern, Alpha, Beta, Gamma, Delta, and Omicron, have been…

Genomics · Quantitative Biology 2026-05-07 Bo Jing , Kai-Rui Zhang , Hong-Li Zeng , Erik Aurell

A second wave of SARS-CoV-2 is unfolding in dozens of countries. However, this second wave manifests itself strongly in new reported cases, but less in death counts compared to the first wave. Over the past three months in Germany, the…

Populations and Evolution · Quantitative Biology 2020-10-28 Matthias Linden , Jonas Dehning , Sebastian B. Mohr , Jan Mohring , Michael Meyer-Hermann , Iris Pigeot , Anita Schöbel , Viola Priesemann
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