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The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…

Social and Information Networks · Computer Science 2017-06-28 Yvonne Anne Pignolet , Matthieu Roy , Stefan Schmid , Gilles Tredan

The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…

Social and Information Networks · Computer Science 2017-03-02 Yvonne Anne Pignolet , Matthieu Roy , Stefan Schmid , Gilles Tredan

Network or graph structures are ubiquitous in the study of complex systems. Often, we are interested in complexity trends of these system as it evolves under some dynamic. An example might be looking at the complexity of a food web as…

Information Theory · Computer Science 2012-01-23 Russell K. Standish

We focus our attention on the link prediction problem for knowledge graphs, which is treated herein as a binary classification task on neural embeddings of the entities. By comparing, combining and extending different methodologies for link…

Artificial Intelligence · Computer Science 2018-07-30 Asan Agibetov , Matthias Samwald

We present here a browser-based application for visualizing patterns of connectivity in 3D stacked data matrices with large numbers of pairwise relations. Visualizing a connectivity matrix, looking for trends and patterns, and dynamically…

Neurons and Cognition · Quantitative Biology 2018-01-04 David J. Caldwell , Jing Wu , Kaitlyn Casimo , Jeffrey G. Ojemann , Rajesh P. N. Rao

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

Statistical Mechanics · Physics 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

Many topological and dynamical properties of complex networks are defined by assuming that most of the transport on the network flows along the shortest paths. However, there are different scenarios in which non-shortest paths are used to…

Physics and Society · Physics 2008-12-16 Ernesto Estrada , Naomichi Hatano

Redundancy needs more precise characterization as it is a major factor in the evolution and robustness of networks of multivariate interactions. We investigate the complexity of such interactions by inferring a connection transitivity that…

Social and Information Networks · Computer Science 2021-10-25 Tiago Simas , Rion Brattig Correia , Luis M. Rocha

Most real-world networks are embedded in latent geometries. If a node in a network is found in the vicinity of another node in the latent geometry, the two nodes have a disproportionately high probability of being connected by a link. The…

Physics and Society · Physics 2024-06-19 Bukyoung Jhun

Complex networks representing social interactions, brain activities, molecular structures have been studied widely to be able to understand and predict their characteristics as graphs. Models and algorithms for these networks are used in…

Social and Information Networks · Computer Science 2022-10-24 Murat Çelik , Ali Baran Taşdemir , Lale Özkahya

Physical Flow Networks are different infrastructure networks that allow the flow of physical commodities through edges between its constituent nodes. These include power grid, natural gas transmission network, water pipelines etc. In such…

Optimization and Control · Mathematics 2016-08-18 Deepjyoti Deka , Scott Backhaus , Michael Chertkov

We report results from an experiment on ranking visual markers and node positioning techniques for network visualizations. Inspired by prior ranking studies, we rethink the ranking when the dataset size increases and when the markers are…

Graphics · Computer Science 2017-11-15 Guohao Zhang , Alexander P. Auchus , Peter Kochunov , Niklas Elmqvist , Jian Chen

Graph Neural Networks (GNNs) are prominent in handling sparse and unstructured data efficiently and effectively. Specifically, GNNs were shown to be highly effective for node classification tasks, where labelled information is available for…

Machine Learning · Computer Science 2022-12-01 Moshe Eliasof , Eldad Haber , Eran Treister

Biological networks, such as cellular metabolic pathways or networks of corticocortical connections in the brain, are intricately organized, yet remarkably robust toward structural damage. Whereas many studies have investigated specific…

Neurons and Cognition · Quantitative Biology 2007-05-23 Marcus Kaiser , Claus C. Hilgetag

Understanding how different networks relate to each other is key for obtaining a greater insight into complex systems. Here, we introduce an intuitive yet powerful framework to characterise the relationship between two networks comprising…

Social and Information Networks · Computer Science 2023-08-09 Andrea I. Luppi , Eckehard Olbrich , Conor Finn , Laura E. Suárez , Fernando E. Rosas , Pedro A. M. Mediano , Jürgen Jost

Exploring the structural topology of genome-based large-scale metabolic network is essential for investigating possible relations between structure and functionality. Visualization would be helpful for obtaining immediate information about…

Molecular Networks · Quantitative Biology 2007-09-06 Zhao Jing , Tao Lin , Yu Hong , Luo Jian-Hua , Z. W. Cao , Li Yixue

Network embedding techniques aim at representing structural properties of graphs in geometric space. Those representations are considered useful in downstream tasks such as link prediction and clustering. However, the number of graph…

Physics and Society · Physics 2021-11-03 Yi-Jiao Zhang , Kai-Cheng Yang , Filippo Radicchi

Various hypotheses exist about the paths used for communication between the nodes of complex networks. Most studies simply suppose that communication goes via shortest paths, while others have more explicit assumptions about how routing…

Acceleration of graph applications on GPUs has found large interest due to the ubiquitous use of graph processing in various domains. The inherent \textit{irregularity} in graph applications leads to several challenges for parallelization.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-02 Ananya Raval , Rupesh Nasre , Vivek Kumar , Vasudevan R , Sathish Vadhiyar , Keshav Pingali

The analysis of complex high-dimensional data is a common task in many domains, resulting in bespoke visual exploration tools. Expectations and practices of domain experts as users do not always align with visualization theory. In this…

Human-Computer Interaction · Computer Science 2024-04-08 Christian Knoll , Laura Koesten , Isotta Rigoni , Serge Vulliémoz , Torsten Möller