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Systems of self-propelled particles are known for their tendency to aggregate and to display swarm behavior. We investigate two model systems, self-propelled rods interacting via volume exclusion, and sinusoidally-beating flagella embedded…

Biological Physics · Physics 2010-09-28 Yingzi Yang , Vincent Marceau , Gerhard Gompper

In-phase synchronization is a special case of synchronous behavior when coupled oscillators have the same phases for any time moments. Such behavior appears naturally for nearly identical coupled limit-cycle oscillators when the coupling…

Adaptation and Self-Organizing Systems · Physics 2019-09-24 Viktor Novičenko , Irmantas Ratas

Microorganismal motility is often characterised by complex responses to environmental physico-chemical stimuli. Although the biological basis of these responses is often not well understood, their exploitation already promises novel avenues…

Biological Physics · Physics 2019-11-26 Jorge Arrieta , Marco Polin , Ramón Saleta-Piersanti , Idan Tuval

We report an instability exhibited by a fluid system when coupling two distinct types of waves, both linearly damped. While none of them is unstable on its own, they amplify one another, resulting in a previously unreported convective…

Soft Condensed Matter · Physics 2025-03-05 Grégoire Le Lay , Adrian Daerr

The unicellular microalga Chlamydomonas reinhardtii is widely recognized as a premier model living microswimmer for physicists and biophysicists. However, the interest around C. reinhardtii goes beyond its swimming capabilities. In fact,…

Coupled biological oscillators can tick with the same period. How this collective period is established is a key question in understanding biological clocks. We explore this question in the segmentation clock, a population of coupled…

Tissues and Organs · Quantitative Biology 2010-09-03 Leah Herrgen , Saul Ares , Luis G. Morelli , Christian Schroeter , Frank Julicher , Andrew C. Oates

In healthy hearts myocytes are typically coupled to nearest neighbours through gap junctions. Under pathological conditions such as fibrosis, or in scar tissue, or across ablation lines myocytes can uncouple from their neighbours.…

Tissues and Organs · Quantitative Biology 2023-11-14 S. Sridhar , Richard. H. Clayton

Asymmetries and anisotropies are widespread in biological systems, including in the structure and dynamics of cilia and eukaryotic flagella. These microscopic, hair-like appendages exhibit asymmetric beating patterns that break…

Soft Condensed Matter · Physics 2025-08-22 Bethany Clarke , Yongyun Hwang , Eric E Keaveny

The intricate wobbling motion of flagellated bacteria, characterized by the periodic precession of the cell body, is a determinant factor in their motility and navigation within complex fluid environments. While well-studied in quiescent…

Soft Condensed Matter · Physics 2026-01-26 Wei Feng , Fanglong Dang , Hao Luo , Alan C. H. Tsang , Yanan Liu , Guangyin Jing

The observed spatio-temporal ciliary beat patterns on multiciliated epithelia are suspected to be the result of self-organizing processes on various levels. Here, we present an abstract epithelium model at the pluricellular level, which…

Soft Condensed Matter · Physics 2019-07-30 Martin Schneiter , Jaroslav Ricka , Martin Frenz

The mechanism of synchronization of oscillations in two identical coupled flow systems has beenstudied. The time (past the coupling onset) during which a synchronous oscillation regime is establisheddepends on the oscillation phase…

Chaotic Dynamics · Physics 2015-06-26 A. A. Koronovskii , A. E. Hramov , I. A. Khromova

Gap-junctional coupling is an important way of communication between neurons and other excitable cells. Strong electrical coupling synchronizes activity across cell ensembles. Surprisingly, in the presence of noise synchronous oscillations…

Adaptation and Self-Organizing Systems · Physics 2012-06-05 Georgi S. Medvedev , Svitlana Zhuravytska

The deformations of flagella are important in the motility of single- and multi-flagellated bacteria. Existing numerical methods have treated flagella as extensible filaments with a large extensional modulus, resulting in a stiff numerical…

Fluid Dynamics · Physics 2020-07-15 Mehdi Jabbarzadeh , Henry C. Fu

The normal modes for three to seven particle two-dimensional (2D) dust clusters in a complex plasma are investigated using an N-body simulation. The ion wakefield downstream of each particle is shown to induce coupling between horizontal…

Plasma Physics · Physics 2014-06-25 Ke Qiao , Jie Kong , Eric Van Oeveren , Lorin S. Matthews , Truell W. Hyde

We create a mechanism inspired by bacterial swimmers, featuring two flexible flagella with individual control over rotation speed and direction in viscous fluid environments. Using readily available materials, we design and fabricate…

Robotics · Computer Science 2024-05-07 Zhuonan Hao , Siddharth Zalavadia , Mohammad Khalid Jawed

All cells must keep time to consistently perform vital biological functions. To that end, the coupling and interrelatedness of diverse subsecond events in the complex cellular environment, such as protein folding or translation rates,…

Subcellular Processes · Quantitative Biology 2012-10-02 Sepehr Ehsani

Controlling the coupling between different degrees of freedom in many-body systems is a powerful technique for engineering novel phases of matter. We create a bilayer system of two-dimensional (2D) ultracold Bose gases and demonstrate the…

We illustrate shape mode analysis as a simple, yet powerful technique to concisely describe complex biological shapes and their dynamics. We characterize undulatory bending waves of beating flagella and reconstruct a limit cycle of…

Quantitative Methods · Quantitative Biology 2015-06-22 Steffen Werner , Jochen C. Rink , Ingmar H. Riedel-Kruse , Benjamin M. Friedrich

It is important to understand the coordinated performance of cells in tissue. One possible mechanism in this coordination involves intracellular calcium signaling. The topology of intercellular connections in tissue should also play an…

Biological Physics · Physics 2007-10-22 Irina V. Dokukina , Maria E. Gracheva , Eugene A. Grachev , James D. Gunton

The collective motion of dust particles during the mode-coupling induced melting of a two-dimensional plasma crystal is explored in molecular dynamics simulations. The crystal is compressed horizontally by an anisotropic confinement. This…

Plasma Physics · Physics 2015-07-17 I. Laut , C. Räth , S. Zhdanov , V. Nosenko , L. Couëdel , H. M. Thomas