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Magnetic Resonance Imaging (MRI) is widely used in routine clinical diagnosis and treatment. However, variations in MRI acquisition protocols result in different appearances of normal and diseased tissue in the images. Convolutional neural…

Purpose: Medical images acquired using different scanners and protocols can differ substantially in their appearance. This phenomenon, scanner domain shift, can result in a drop in the performance of deep neural networks which are trained…

Image and Video Processing · Electrical Eng. & Systems 2024-10-03 Brian Guo , Darui Lu , Gregory Szumel , Rongze Gui , Tingyu Wang , Nicholas Konz , Maciej A. Mazurowski

Domain Adaptation (DA) methods are widely used in medical image segmentation tasks to tackle the problem of differently distributed train (source) and test (target) data. We consider the supervised DA task with a limited number of annotated…

Computer Vision and Pattern Recognition · Computer Science 2021-07-13 Ivan Zakazov , Boris Shirokikh , Alexey Chernyavskiy , Mikhail Belyaev

The U-net architecture has significantly impacted deep learning-based segmentation of medical images. Through the integration of long-range skip connections, it facilitated the preservation of high-resolution features. Out-of-distribution…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Frauke Wilm , Jonas Ammeling , Mathias Öttl , Rutger H. J. Fick , Marc Aubreville , Katharina Breininger

Convolutional neural networks (CNNs) have shown promising results on several segmentation tasks in magnetic resonance (MR) images. However, the accuracy of CNNs may degrade severely when segmenting images acquired with different scanners…

Machine Learning · Statistics 2018-05-28 Neerav Karani , Krishna Chaitanya , Christian Baumgartner , Ender Konukoglu

A common approach to transfer learning under distribution shift is to fine-tune the last few layers of a pre-trained model, preserving learned features while also adapting to the new task. This paper shows that in such settings, selectively…

Machine Learning · Computer Science 2023-06-07 Yoonho Lee , Annie S. Chen , Fahim Tajwar , Ananya Kumar , Huaxiu Yao , Percy Liang , Chelsea Finn

Limited amount of labelled training data are a common problem in medical imaging. This makes it difficult to train a well-generalised model and therefore often leads to failure in unknown domains. Hippocampus segmentation from magnetic…

Image and Video Processing · Electrical Eng. & Systems 2022-01-19 John Kalkhof , Camila González , Anirban Mukhopadhyay

The potential of deep neural networks in skin lesion classification has already been demonstrated to be on-par if not superior to the dermatologists diagnosis. However, the performance of these models usually deteriorates when the test data…

Computer Vision and Pattern Recognition · Computer Science 2023-10-06 Sireesha Chamarthi , Katharina Fogelberg , Roman C. Maron , Titus J. Brinker , Julia Niebling

In recent years, several convolutional neural network (CNN) methods have been proposed for the automated white matter lesion segmentation of multiple sclerosis (MS) patient images, due to their superior performance compared with those of…

Computer Vision and Pattern Recognition · Computer Science 2018-06-01 Sergi Valverde , Mostafa Salem , Mariano Cabezas , Deborah Pareto , Joan C. Vilanova , Lluís Ramió-Torrentà , Àlex Rovira , Joaquim Salvi , Arnau Oliver , Xavier Lladó

Deep learning-based methods deliver state-of-the-art performance for solving inverse problems that arise in computational imaging. These methods can be broadly divided into two groups: (1) learn a network to map measurements to the signal…

Image and Video Processing · Electrical Eng. & Systems 2023-10-11 Nebiyou Yismaw , Ulugbek S. Kamilov , M. Salman Asif

The limited ability of Convolutional Neural Networks to generalize to images from previously unseen domains is a major limitation, in particular, for safety-critical clinical tasks such as dermoscopic skin cancer classification. In order to…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Katharina Fogelberg , Sireesha Chamarthi , Roman C. Maron , Julia Niebling , Titus J. Brinker

Machine learning and computer vision methods are showing good performance in medical imagery analysis. Yetonly a few applications are now in clinical use and one of the reasons for that is poor transferability of themodels to data from…

Image and Video Processing · Electrical Eng. & Systems 2020-10-15 Ekaterina Kondrateva , Marina Pominova , Elena Popova , Maxim Sharaev , Alexander Bernstein , Evgeny Burnaev

Fine-tuning a network which has been trained on a large dataset is an alternative to full training in order to overcome the problem of scarce and expensive data in medical applications. While the shallow layers of the network are usually…

Image and Video Processing · Electrical Eng. & Systems 2020-02-21 Mina Amiri , Rupert Brooks , Hassan Rivaz

Neuroimaging studies based on magnetic resonance imaging (MRI) typically employ rigorous forms of preprocessing. Images are spatially normalized to a standard template using linear and non-linear transformations. Thus, one can assume that a…

Computer Vision and Pattern Recognition · Computer Science 2019-11-15 Fabian Eitel , Jan Philipp Albrecht , Friedemann Paul , Kerstin Ritter

Deep learning-based models in medical imaging often struggle to generalize effectively to new scans due to data heterogeneity arising from differences in hardware, acquisition parameters, population, and artifacts. This limitation presents…

Image and Video Processing · Electrical Eng. & Systems 2023-08-09 Sebastian Nørgaard Llambias , Mads Nielsen , Mostafa Mehdipour Ghazi

The clinical integration of deep learning models for brain tumor diagnosis in neuro-oncology is severely constrained by limited expert-annotated MRI data and substantial inter-institutional domain shift arising from variations in scanners,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-06 Sapna Sachan , Amulya Kumar Mahto , Prashant Wagambar Patil

In medical imaging, the heterogeneity of multi-centre data impedes the applicability of deep learning-based methods and results in significant performance degradation when applying models in an unseen data domain, e.g. a new centreor a new…

Computer Vision and Pattern Recognition · Computer Science 2020-08-12 Hongwei Li , Timo Loehr , Anjany Sekuboyina , Jianguo Zhang , Benedikt Wiestler , Bjoern Menze

Cardiac magnetic resonance imaging (cMRI) is an integral part of diagnosis in many heart related diseases. Recently, deep neural networks have demonstrated successful automatic segmentation, thus alleviating the burden of time-consuming…

Image and Video Processing · Electrical Eng. & Systems 2020-11-17 Peter M. Full , Fabian Isensee , Paul F. Jäger , Klaus Maier-Hein

Domain shift, the mismatch between training and testing data characteristics, causes significant degradation in the predictive performance in multi-source imaging scenarios. In medical imaging, the heterogeneity of population, scanners and…

Machine Learning · Computer Science 2021-12-21 Rongguang Wang , Pratik Chaudhari , Christos Davatzikos

Domain shift refers to the difference in the data distribution of two datasets, normally between the training set and the test set for machine learning algorithms. Domain shift is a serious problem for generalization of machine learning…

Image and Video Processing · Electrical Eng. & Systems 2021-09-29 Devran Ugurlu , Esther Puyol-Anton , Bram Ruijsink , Alistair Young , Ines Machado , Kerstin Hammernik , Andrew P. King , Julia A. Schnabel
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