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In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not…

Software Engineering · Computer Science 2023-08-03 Lázaro Costa , Susana Barbosa , Jácome Cunha

This work uses the long-wavelength limit to compute LSPR response of biosensors, expanding the open-source PyGBe code to compute the extinction cross-section of metallic nanoparticles in the presence of any target for sensing. The target…

Computational Physics · Physics 2020-07-28 Natalia C. Clementi , Christopher D. Cooper , Lorena A. Barba

Increased reproducibility of machine learning research has been a driving force for dramatic improvements in learning performances. The scientific community further fosters this effort by including reproducibility ratings in reviewer forms…

Computation and Language · Computer Science 2023-10-17 Eyüp Kaan Akdeniz , Selma Tekir , Malik Nizar Asad Al Hinnawi

An essential part of research and scientific communication is researchers' ability to reproduce the results of others. While there have been increasing standards for authors to make data and code available, many of these files are hard to…

Digital Libraries · Computer Science 2021-09-23 Layan Bahaidarah , Ethan Hung , Andreas F. De Melo Oliveira , Jyotsna Penumaka , Lukas Rosario , Ana Trisovic

Reproducibility should be a cornerstone of scientific research and is a growing concern among the scientific community and the public. Understanding how to design services and tools that support documentation, preservation and sharing is…

Human-Computer Interaction · Computer Science 2019-03-15 Sebastian S. Feger , Sünje Dallmeier-Tiessen , Albrecht Schmidt , Paweł W. Woźniak

The field of deep learning has witnessed significant breakthroughs, spanning various applications, and fundamentally transforming current software capabilities. However, alongside these advancements, there have been increasing concerns…

Machine Learning · Computer Science 2025-05-07 Nikita Ravi , Abhinav Goel , James C. Davis , George K. Thiruvathukal

The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around…

Software Engineering · Computer Science 2017-07-31 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

Digital Libraries · Computer Science 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…

Quantitative Methods · Quantitative Biology 2021-04-13 Michael L. Blinov , John H. Gennari , Jonathan R. Karr , Ion I. Moraru , David P. Nickerson , Herbert M. Sauro

The aim of the present work is to investigate the mechanisms of broadband trailing-edge noise generation to improve prediction tools and control strategies. We focus on a NACA 0012 airfoil at 3 degrees angle of attack and chord Reynolds…

Breaking reciprocity has recently gained significant attention due to its broad range of applications in engineering systems. Here, we introduce the first experimental demonstration of a broadband mechanical beam waveguide, which can be…

Applied Physics · Physics 2023-01-04 Amin Mehrvarz , Mohammad Javad Khodaei , Amir Darabi , Ahmad Zareei , Nader Jalili

Interactions between surfaces and proteins occur in many vital processes and are crucial in biotechnology: the ability to control specific interactions is essential in fields like biomaterials, biomedical implants and biosensors. In the…

Computational Physics · Physics 2016-04-20 Christopher D. Cooper , Lorena A. Barba

Reproducibility of results is a cornerstone of the scientific method. Scientific computing encounters two challenges when aiming for this goal. Firstly, reproducibility should not depend on details of the runtime environment, such as the…

General Relativity and Quantum Cosmology · Physics 2023-12-12 Yufeng Luo , Qian Zhang , Roland Haas , Zachariah B. Etienne , Gabrielle Allen

A deep learning system typically suffers from a lack of reproducibility that is partially rooted in hardware or software implementation details. The irreproducibility leads to skepticism in deep learning technologies and it can hinder them…

Computer Vision and Pattern Recognition · Computer Science 2024-10-15 Jiahao Pang , Muhammad Asad Lodhi , Junghyun Ahn , Yuning Huang , Dong Tian

Recently, much attention has been focused on the replicability of scientific results, causing scientists, statisticians, and journal editors to examine closely their methodologies and publishing criteria. Experimental particle physicists…

Data Analysis, Statistics and Probability · Physics 2021-05-07 Thomas R. Junk , Louis Lyons

Building Performance Simulation (BPS) uses advanced computational and data science methods. Reproducibility, the ability to obtain the same results by using the same data and methods, is essential in BPS research to ensure the reliability…

Digital Libraries · Computer Science 2025-03-19 Christian Ghiaus

Many nanostructures today are low-dimensional and flimsy, and therefore get easily distorted. Distortion-induced symmetry-breaking makes conventional, translation-periodic simulations invalid, which has triggered developments for new…

Materials Science · Physics 2011-10-19 Oleg O. Kit , Lars Pastewka , Pekka Koskinen

This paper explains how a popular, commercially-available software package for solving partial-differential-equations (PDEs), as based on the finite-element method (FEM), can be configured to calculate, efficiently, the frequencies and…

Quantum Physics · Physics 2015-06-26 Mark Oxborrow

This is the second part of a small-scale explorative study in an effort to assess reproducibility issues specific to scientometrics research. This effort is motivated by the desire to generate empirical data to inform debates about…

Digital Libraries · Computer Science 2018-04-16 Theresa Velden , Sybille Hinze , Andrea Scharnhorst , Jesper Wiborg Schneider , Ludo Waltman

Nanobem is a Matlab toolbox for the solution of Maxwell's equations for nanophotonic systems and the computation of resonance modes, sometimes also referred to as quasinormal modes or resonance states. It is based on a Galerkin scheme for…

Computational Physics · Physics 2022-05-18 Ulrich Hohenester , Nikita Reichelt , Gerhard Unger
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