Related papers: A Complexity Dichotomy for Permutation Pattern Mat…
We study pattern matching problems on two major representations of uncertain sequences used in molecular biology: weighted sequences (also known as position weight matrices, PWM) and profiles (i.e., scoring matrices). In the simple version,…
A symmetric matrix $C$ is completely positive (CP) if there exists an entrywise nonnegative matrix $B$ such that $C=BB^T$. The CP-completion problem is to study whether we can assign values to the missing entries of a partial matrix (i.e.,…
We study the problem of consistent query answering under primary key violations. In this setting, the relations in a database violate the key constraints and we are interested in maximal subsets of the database that satisfy the constraints,…
The problem Cover(H) asks whether an input graph G covers a fixed graph H (i.e., whether there exists a homomorphism G to H which locally preserves the structure of the graphs). Complexity of this problem has been intensively studied. In…
In this paper, we present an algorithm that enumerates a certain class of signed permutations, referred to as grid signed permutation classes. In the case of permutations, the corresponding grid classes are of interest because they are…
In pursuit of a deeper understanding of Boolean Promise Constraint Satisfaction Problems (PCSPs), we identify a class of problems with restricted structural complexity, which could serve as a promising candidate for complete…
In the present paper we show a dichotomy theorem for the complexity of polynomial evaluation. We associate to each graph H a polynomial that encodes all graphs of a fixed size homomorphic to H. We show that this family is computable by…
In the discrete Tempotron learning problem a neuron receives time varying inputs and for a set of such input sequences ($\mathcal S_-$ set) the neuron must be sub-threshold for all times while for some other sequences ($\mathcal S_+$ set)…
A permutation $\pi$ contains a permutation $\sigma$ as a pattern if it contains a subsequence of length $|\sigma|$ whose elements are in the same relative order as in the permutation $\sigma$. This notion plays a major role in enumerative…
Given a graph, when can we orient the edges to satisfy local constraints at the vertices, where each vertex specifies which local orientations of its incident edges are allowed? This family of graph orientation problems is a special kind of…
Grid graphs, and, more generally, $k\times r$ grid graphs, form one of the most basic classes of geometric graphs. Over the past few decades, a large body of works studied the (in)tractability of various computational problems on grid…
P-time event graphs are discrete event systems able to model cyclic production systems where tasks need to be performed within given time windows. Consistency is the property of admitting an infinite execution of such tasks that does not…
We investigate the intersection problem for finite semigroups, which asks for a given set of regular languages, represented by recognizing morphisms to finite semigroups, whether there exists a word contained in their intersection. We…
The notion of graph covers (also referred to as locally bijective homomorphisms) plays an important role in topological graph theory and has found its computer science applications in models of local computation. For a fixed target graph…
We produce a class of $\omega$-categorical structures with finite signature by applying a model-theoretic construction -- a refinement of the Hrushosvki-encoding -- to $\omega$-categorical structures in a possibly infinite signature. We…
This paper introduces the covering path problem on a grid (CPPG) which finds the cost-minimizing path connecting a subset of points in a grid such that each point that needs to be covered is within a predetermined distance of a point from…
A matching $M$ is a $\mathscr{P}$-matching if the subgraph induced by the endpoints of the edges of $M$ satisfies property $\mathscr{P}$. As examples, for appropriate choices of $\mathscr{P}$, the problems Induced Matching, Uniquely…
In (Kabanets, Impagliazzo, 2004) it is shown how to decide the circuit polynomial identity testing problem (CPIT) in deterministic subexponential time, assuming hardness of some explicit multilinear polynomial family for arithmetical…
This paper extends prior work on the connections between logics from finite model theory and propositional/algebraic proof systems. We show that if all non-isomorphic graphs in a given graph class can be distinguished in the logic…
Applied category theory often studies symmetric monoidal categories (SMCs) whose morphisms represent open systems. These structures naturally accommodate complex wiring patterns, leveraging (co)monoidal structures for splitting and merging…