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By providing a framework of accounting for the shared ancestry inherent to all life, phylogenetics is becoming the statistical foundation of biology. The importance of model choice continues to grow as phylogenetic models continue to…

Populations and Evolution · Quantitative Biology 2019-02-05 Jamie R. Oaks , Kerry A. Cobb , Vladimir N. Minin , Adam D. Leaché

Variational inference is a powerful tool for approximate inference. However, it mainly focuses on the evidence lower bound as variational objective and the development of other measures for variational inference is a promising area of…

Machine Learning · Computer Science 2016-12-06 Michael Figurnov , Kirill Struminsky , Dmitry Vetrov

Gaussian latent tree models, or more generally, Gaussian latent forest models have Fisher-information matrices that become singular along interesting submodels, namely, models that correspond to subforests. For these singularities, we…

Methodology · Statistics 2015-12-24 Mathias Drton , Shaowei Lin , Luca Weihs , Piotr Zwiernik

Due to unmeasured confounding, it is often not possible to identify causal effects from a postulated model. Nevertheless, we can ask for partial identification, which usually boils down to finding upper and lower bounds of a causal quantity…

Machine Learning · Statistics 2022-03-01 Jakob Zeitler , Ricardo Silva

Bayesian inference provides a flexible way of combining data with prior information. However, quantile regression is not equipped with a parametric likelihood, and therefore, Bayesian inference for quantile regression demands careful…

Statistics Theory · Mathematics 2012-07-24 Yunwen Yang , Xuming He

In this paper, we present a method for computing the marginal likelihood, also known as the model likelihood or Bayesian evidence, from Markov Chain Monte Carlo (MCMC), or other sampled posterior distributions. In order to do this, one…

In statistical practice, a realistic Bayesian model for a given data set can be defined by a likelihood function that is analytically or computationally intractable, due to large data sample size, high parameter dimensionality, or complex…

Methodology · Statistics 2019-03-19 George Karabatsos , Fabrizio Leisen

We propose a new Bayesian Neural Net formulation that affords variational inference for which the evidence lower bound is analytically tractable subject to a tight approximation. We achieve this tractability by (i) decomposing ReLU…

Machine Learning · Statistics 2019-06-13 Manuel Haussmann , Fred A. Hamprecht , Melih Kandemir

We present a general approach, based on exponential inequalities, to derive bounds on the generalization error of randomized learning algorithms. Using this approach, we provide bounds on the average generalization error as well as bounds…

Machine Learning · Computer Science 2023-03-10 Fredrik Hellström , Giuseppe Durisi

We develop novel empirical Bernstein inequalities for the variance of bounded random variables. Our inequalities hold under constant conditional variance and mean, without further assumptions like independence or identical distribution of…

Statistics Theory · Mathematics 2026-05-28 Diego Martinez-Taboada , Aaditya Ramdas

In this paper we consider the problem of inference in statistical models characterized by moment restrictions by casting the problem within the Exponentially Tilted Empirical Likelihood (ETEL) framework. Because the ETEL function has a well…

Methodology · Statistics 2017-04-10 Siddhartha Chib , Minchul Shin , Anna Simoni

We revisit the theory of importance weighted variational inference (IWVI), a promising strategy for learning latent variable models. IWVI uses new variational bounds, known as Monte Carlo objectives (MCOs), obtained by replacing intractable…

Machine Learning · Statistics 2022-01-27 Pierre-Alexandre Mattei , Jes Frellsen

Inference in Bayesian statistics involves the evaluation of marginal likelihood integrals. We present algebraic algorithms for computing such integrals exactly for discrete data of small sample size. Our methods apply to both uniform priors…

Computation · Statistics 2009-02-13 Shaowei Lin , Bernd Sturmfels , Zhiqiang Xu

Typical Bayesian methods for models with latent variables (or random effects) involve directly sampling the latent variables along with the model parameters. In high-level software code for model definitions (using, e.g., BUGS, JAGS, Stan),…

Computation · Statistics 2022-12-12 E. C. Merkle , D. Furr , S. Rabe-Hesketh

Bayesian inference with empirical likelihood faces a challenge as the posterior domain is a proper subset of the original parameter space due to the convex hull constraint. We propose a regularized exponentially tilted empirical likelihood…

Methodology · Statistics 2026-04-23 Eunseop Kim , Steven N. MacEachern , Mario Peruggia

This paper presents a new Bayesian framework for quantifying discretization errors in numerical solutions of ordinary differential equations. By modelling the errors as random variables, we impose a monotonicity constraint on the variances,…

Numerical Analysis · Mathematics 2024-11-14 Yuto Miyatake , Kaoru Irie , Takeru Matsuda

We study a marginal empirical likelihood approach in scenarios when the number of variables grows exponentially with the sample size. The marginal empirical likelihood ratios as functions of the parameters of interest are systematically…

Statistics Theory · Mathematics 2013-11-07 Jinyuan Chang , Cheng Yong Tang , Yichao Wu

Many crucial problems in deep learning and statistical inference are caused by a variational gap, i.e., a difference between model evidence (log-likelihood) and evidence lower bound (ELBO). In particular, in a classical VAE setting that…

Machine Learning · Computer Science 2025-03-06 Łukasz Struski , Marcin Mazur , Paweł Batorski , Przemysław Spurek , Jacek Tabor

Estimating the model evidence - or mariginal likelihood of the data - is a notoriously difficult task for finite and infinite mixture models and we reexamine here different Monte Carlo techniques advocated in the recent literature, as well…

Computation · Statistics 2022-05-12 Adrien Hairault , Christian P. Robert , Judith Rousseau

Model selection and order selection problems frequently arise in statistical practice. A popular approach to addressing these problems in the frequentist setting involves information criteria based on penalised maxima of log-likelihoods for…

Statistics Theory · Mathematics 2025-10-29 Hien Duy Nguyen , Mayetri Gupta , Jacob Westerhout , TrungTin Nguyen