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Principal component analysis (PCA) represents a standard approach to identify collective variables $\{x_i\}\!=\!\boldsymbol{x}$, which can be used to construct the free energy landscape $\Delta G(\boldsymbol{x})$ of a molecular system.…

Biomolecules · Quantitative Biology 2019-05-30 Matthias Post , Steffen Wolf , Gerhard Stock

Principal Component Analysis (PCA) is a powerful tool in statistics and machine learning. While existing study of PCA focuses on the recovery of principal components and their associated eigenvalues, there are few precise characterizations…

Statistics Theory · Mathematics 2022-04-12 Emmanuel Abbe , Jianqing Fan , Kaizheng Wang

Principal Component Analysis (PCA) is an important tool of dimension reduction especially when the dimension (or the number of variables) is very high. Asymptotic studies where the sample size is fixed, and the dimension grows [i.e., High…

Statistics Theory · Mathematics 2009-11-20 Sungkyu Jung , J. S. Marron

Principal component analysis (PCA) is very popular to perform dimension reduction. The selection of the number of significant components is essential but often based on some practical heuristics depending on the application. Only few works…

Machine Learning · Statistics 2017-09-19 Clément Elvira , Pierre Chainais , Nicolas Dobigeon

We propose a multiple imputation method based on principal component analysis (PCA) to deal with incomplete continuous data. To reflect the uncertainty of the parameters from one imputation to the next, we use a Bayesian treatment of the…

Methodology · Statistics 2015-08-20 Vincent Audigier , François Husson , Julie Josse

When the dimension of data is comparable to or larger than the number of data samples, Principal Components Analysis (PCA) may exhibit problematic high-dimensional noise. In this work, we propose an Empirical Bayes PCA method that reduces…

Methodology · Statistics 2021-09-07 Xinyi Zhong , Chang Su , Zhou Fan

Principal component analysis (PCA) is a widely used method for dimension reduction. In high dimensional data, the "signal" eigenvalues corresponding to weak principal components (PCs) do not necessarily separate from the bulk of the "noise"…

Statistics Theory · Mathematics 2017-10-03 Edgar Dobriban

We use the techniques of integration of Poisson manifolds into symplectic Lie groupoids to build symplectic resolutions (= desingularizations) of the closure of a symplectic leaf. More generally, we show how Lie groupoids can be used to…

Differential Geometry · Mathematics 2007-11-20 Camille Laurent-Gengoux

Principal Component Analysis (PCA) is a classical method for reducing the dimensionality of data by projecting them onto a subspace that captures most of their variation. Effective use of PCA in modern applications requires understanding…

Statistics Theory · Mathematics 2019-06-14 David Hong , Laura Balzano , Jeffrey A. Fessler

This paper investigates the generalization of Principal Component Analysis (PCA) to Riemannian manifolds. We first propose a new and general type of family of subspaces in manifolds that we call barycentric subspaces. They are implicitly…

Statistics Theory · Mathematics 2017-10-05 Xavier Pennec

Due to the rapid growth of smart agents such as weakly connected computational nodes and sensors, developing decentralized algorithms that can perform computations on local agents becomes a major research direction. This paper considers the…

Machine Learning · Computer Science 2021-02-09 Haishan Ye , Tong Zhang

This study applied representation learning algorithms to satellite images and evaluated the learned latent spaces with classifications of various weather events. The algorithms investigated include the classical linear transformation, i.e.,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Ting-Shuo Yo , Shih-Hao Su , Chien-Ming Wu , Wei-Ting Chen , Jung-Lien Chu , Chiao-Wei Chang , Hung-Chi Kuo

This paper presents a new framework for manifold learning based on a sequence of principal polynomials that capture the possibly nonlinear nature of the data. The proposed Principal Polynomial Analysis (PPA) generalizes PCA by modeling the…

Machine Learning · Statistics 2016-02-02 Valero Laparra , Sandra Jiménez , Devis Tuia , Gustau Camps-Valls , Jesús Malo

The spectral densities of ensembles of non-Hermitian sparse random matrices are analysed using the cavity method. We present a set of equations from which the spectral density of a given ensemble can be efficiently and exactly calculated.…

Disordered Systems and Neural Networks · Physics 2009-11-13 Tim Rogers , Isaac Perez Castillo

We introduce the method of Geodesic Principal Component Analysis (GPCA) on the space of probability measures on the line, with finite second moment, endowed with the Wasserstein metric. We discuss the advantages of this approach, over a…

Methodology · Statistics 2014-10-07 Jérémie Bigot , Raúl Gouet , Thierry Klein , Alfredo López

Independent component analysis (ICA) is popular in many applications, including cognitive neuroscience and signal processing. Due to computational constraints, principal component analysis is used for dimension reduction prior to ICA…

Methodology · Statistics 2017-10-03 Benjamin B. Risk , David S. Matteson , David Ruppert

Principal Component Analysis (PCA) is a widely used technique in exploratory data analysis, visualization, and data preprocessing, leveraging the concept of variance to identify key dimensions in datasets. In this study, we focus on the…

Applications · Statistics 2024-07-03 Reza Dastranj , Martin Kolar

We consider multi-class classification problems for high dimensional data. Following the idea of reduced-rank linear discriminant analysis (LDA), we introduce a new dimension reduction tool with a flavor of supervised principal component…

Methodology · Statistics 2017-03-28 Yue Selena Niu , Ning Hao , Bin Dong

We investigate 2-dimensional Viscoelastic equations with a view of Lie groups. In this sense, we answer question of the symmetry classification. We provide the algebra of symmetry and build the optimal system of Lie subalgebras. Reductions…

Differential Geometry · Mathematics 2021-10-26 Yadollah AryaNejad , Nishteman Zandi

Principal Component Analysis (PCA) is a dimension reduction technique. It produces inconsistent estimators when the dimensionality is moderate to high, which is often the problem in modern large-scale applications where algorithm…

Computation · Statistics 2016-01-29 Qiaoya Zhang , Yiyuan She