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Trapping macromolecules is impoartant for the study of their conformations, interactions, dynamics and kinetic processes. Here, we develop a variational approach which self-consistently introduces a mean force that controls the…

Soft Condensed Matter · Physics 2024-04-23 Luofu Liu , Chao Duan , Rui Wang

A theory is set up of spherical proteins interacting by screened electrostatics and constant adhesion, in which the effective adhesion parameter is optimized by a variational principle for the free energy. An analytical approach to the…

Soft Condensed Matter · Physics 2009-11-10 Peter Prinsen , Theo Odijk

Series of experiments on turbulent bubbly channel flows observed bubble clusters near the wall which can change large-scale flow structures. To gain insights into clustering mechanisms, we study the interaction of a pair of spherical…

Fluid Dynamics · Physics 2022-02-07 Kazuki Maeda , Masanobu Date , Kazuyasu Sugiyama , Shu Takagi , Yoichiro Matsumoto

This key-issues review is a plea for a new focus on simpler and more realistic models of glass-forming fluids. It seems to me that we have too often been led astray by sophisticated mathematical models that beautifully capture some of the…

Statistical Mechanics · Physics 2015-06-17 J. S. Langer

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

Statistical Mechanics · Physics 2015-07-08 Ricardo Martínez-García , Clara Murgui , Emilio Hernández-García , Cristóbal López

Collective-density variables have proved to be a useful tool in the prediction and manipulation of how spatial patterns form in the classical many-body problem. Previous work has employed properties of collective-density variables along…

Statistical Mechanics · Physics 2015-06-11 Stephen Martis , Étienne Marcotte , Frank H. Stillinger , Salvatore Torquato

We derive a model describing spatio-temporal organization of an array of microtubules interacting via molecular motors. Starting from a stochastic model of inelastic polar rods with a generic anisotropic interaction kernel we obtain a set…

Soft Condensed Matter · Physics 2007-05-23 Igor S. Aranson , Lev S. Tsimring

A simple, discrete, parametric model is proposed to describe conditional (correlated) deposition of particles on a surface and formation of a connecting (percolating) cluster. The surface changes spontaneously its properties (phase…

Statistical Mechanics · Physics 2007-05-23 Ana Proykova , Boris Karadjov

We investigate the formation of polycrystalline structures in a class of particle systems. The atomistic energy is modeled as a sum of particle energies that favor atoms being locally isometric to a reference lattice. The discrete frame…

Mesoscale and Nanoscale Physics · Physics 2026-04-22 Leonard Kreutz , Timo Ziereis

We derive from first principles a three-dimensional theory of self-propelled particle swarming in a viscous fluid environment. Our model predicts emergent collective behavior that depends critically on fluid opacity, mechanism of…

Soft Condensed Matter · Physics 2026-05-12 Yao-Li Chuang , M. R. D'Orsogna , T. Chou

We investigate the ordering properties of vertically-vibrated monolayers of granular cylinders in a circular container at high packing fraction. In line with previous works by other groups, we identify liquid-crystalline ordering behaviour…

Soft Condensed Matter · Physics 2017-05-16 Miguel Gonzalez-Pinto , Florentino Borondo , Yuri Martinez-Raton , Enrique Velasco

Through considering a two-component dipolar Bose-Einstein condensate, we investigate the influence of the angle between the polarization orientations of the two species on the ground states, and show that the miscibility between the two…

Quantum Gases · Physics 2024-05-22 Liang-Jun He , Bo Liu , Yong-Chang Zhang

Hard sphere colloidal particles are a basic model system for general research into phase behavior, ordering and out-equilibrium glass transitions. Experimentally it has been shown that oscillatory shearing of a monodisperse hard sphere…

Soft Condensed Matter · Physics 2016-01-13 Nick Koumakis , John F. Brady , George Petekidis

This paper deals with systems of spherical particles immersed in a viscous fluid. Two aspects are studied, namely the controllability of such systems, with particular attention to the case of one active particle and either one or two…

Analysis of PDEs · Mathematics 2024-10-23 Marta Zoppello , Henry Shum , Marco Morandotti

We treat the problem of estimation of orientation parameters whose values are invariant to transformations from a spherical symmetry group. Previous work has shown that any such group-invariant distribution must satisfy a restricted finite…

Machine Learning · Statistics 2015-05-25 Yu-Hui Chen , Dennis Wei , Gregory Newstadt , Marc DeGraef , Jeffrey Simmons , Alfred Hero

This paper is devoted to the study of the asymptotic behavior of solutions to multi-order fractional cooperative systems. First, we demonstrate the boundedness of solutions to fractional-order systems under certain conditions imposed on the…

Dynamical Systems · Mathematics 2024-10-21 L. V. Thinh , H. T. Tuan

Exploring structural order in disordered systems including liquids and glasses is an intriguing but challenging issue in condensed matter physics. Here we construct a new parameter based on the angular distribution function of particles and…

Soft Condensed Matter · Physics 2018-06-11 Xiunan Yang , Wei-Hua Wang , Ke Chen

Collective dynamics in proliferating anisotropic particle systems arise from an interplay between growth, division, and mechanical interactions, often mediated by particle shape. In classical models of prolate, rod-like growth, flow-induced…

Soft Condensed Matter · Physics 2025-12-02 Jonas Isensee , Lukas Hupe , Philip Bittihn

Monte Carlo simulation, experiment and continuum theory are used to examine the anchoring exhibited by a nematic liquid crystal at a patterned substrate comprising a periodic array of rectangles that, respectively, promote vertical and…

Soft Condensed Matter · Physics 2013-08-09 Candy Anquetil-Deck , Douglas J. Cleaver , Jonathan P. Bramble , Timothy J. Atherton

A major challenge for molecular modeling consists in optimizing the unlike interaction potentials. In many cases, combination rules are generally suboptimal when accurate predictions of properties like the mixture vapor pressure are needed.…

Computational Physics · Physics 2010-01-13 Martin Horsch , Martina Heitzig , Thorsten Merker , Thorsten Schnabel , Yow-Lin Huang , Hans Hasse , Jadran Vrabec
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