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Machine learning interatomic potentials (MLIPs) enable the accurate simulation of materials at larger sizes and time scales, and play increasingly important roles in the computational understanding and design of materials. However, MLIPs…

Materials Science · Physics 2023-07-27 Ji Qi , Tsz Wai Ko , Brandon C. Wood , Tuan Anh Pham , Shyue Ping Ong

Nanoparticles (NPs) formed in nonthermal plasmas (NTPs) can have unique properties and applications. However, modeling their growth in these environments presents significant challenges due to the non-equilibrium nature of NTPs, making them…

Computational Physics · Physics 2025-01-03 Matt Raymond , Paolo Elvati , Jacob C. Saldinger , Jonathan Lin , Xuetao Shi , Angela Violi

Interfaces between materials play a crucial role in the performance of most devices. However, predicting the structure of a material interface is computationally demanding due to the vast configuration space, which requires evaluating an…

Materials Science · Physics 2025-08-12 Ned Thaddeus Taylor , Joe Pitfield , Francis Huw Davies , Steven Paul Hepplestone

This work examines the conformational ensemble involved in $\beta$-hairpin folding by means of advanced molecular dynamics simulations and dimensionality reduction. A fully atomistic description of the protein and the surrounding solvent…

Chemical Physics · Physics 2023-06-16 Albert Ardevol , Gareth A. Tribello , Michele Ceriotti , Michele Parrinello

Sampling complex free energy surfaces is one of the main challenges of modern atomistic simulation methods. The presence of kinetic bottlenecks in such surfaces often renders a direct approach useless. A popular strategy is to identify a…

Computational Physics · Physics 2019-09-25 Luigi Bonati , Yue-Yu Zhang , Michele Parrinello

Active learning is of great interest for many practical applications, especially in industry and the physical sciences, where there is a strong need to minimize the number of costly experiments necessary to train predictive models. However,…

Machine Learning · Computer Science 2021-12-23 Maryam Pardakhti , Nila Mandal , Anson W. K. Ma , Qian Yang

Machine/deep learning models have been widely adopted for predicting the configuration performance of software systems. However, a crucial yet unaddressed challenge is how to cater for the sparsity inherited from the configuration…

Software Engineering · Computer Science 2024-11-21 Jingzhi Gong , Tao Chen , Rami Bahsoon

Machine learning potentials have become a standard tool for atomistic materials modelling. While models continue to become more generalisable, an open challenge relates to efficient uncertainty predictions for active learning and robust…

Chemical Physics · Physics 2025-09-16 Hubert Beck , Pavol Simko , Lars L. Schaaf , Ondrej Marsalek , Christoph Schran

We propose a neural network based approach for extracting models from dynamic data using ordinary and partial differential equations. In particular, given a time-series or spatio-temporal dataset, we seek to identify an accurate governing…

Machine Learning · Computer Science 2019-08-09 Yifan Sun , Linan Zhang , Hayden Schaeffer

Neural Network-based active learning (NAL) is a cost-effective data selection technique that utilizes neural networks to select and train on a small subset of samples. While existing work successfully develops various effective or…

Machine Learning · Computer Science 2024-06-07 Dake Bu , Wei Huang , Taiji Suzuki , Ji Cheng , Qingfu Zhang , Zhiqiang Xu , Hau-San Wong

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed…

Neurons and Cognition · Quantitative Biology 2011-12-19 Michael Famulare , Adrienne Fairhall

This paper presents a Bayesian approach to learning the connectivity structure of a group of neurons from data on configuration frequencies. A major objective of the research is to provide statistical tools for detecting changes in firing…

Machine Learning · Computer Science 2013-02-18 Kathryn Blackmond Laskey , Laura Martignon

We introduce a novel, probabilistic binary latent variable model to detect noisy or approximate repeats of patterns in sparse binary data. The model is based on the "Noisy-OR model" (Heckerman, 1990), used previously for disease and topic…

Machine Learning · Statistics 2022-01-27 Christopher Warner , Kiersten Ruda , Friedrich T. Sommer

Scheduling flexible sources to promote the integration of renewable generation is one fundamental problem for operating active distribution networks (ADNs). However, existing works are usually based on power flow models, which require…

Optimization and Control · Mathematics 2022-08-09 Ge Chen , Hongcai Zhang , Yonghua Song

Inductive Logic Programming (ILP) systems learn generalised, interpretable rules in a data-efficient manner utilising existing background knowledge. However, current ILP systems require training examples to be specified in a structured…

Machine Learning · Computer Science 2021-06-28 Daniel Cunnington , Alessandra Russo , Mark Law , Jorge Lobo , Lance Kaplan

Humans perform remarkably well in many cognitive tasks including pattern recognition. However, the neuronal mechanisms underlying this process are not well understood. Nevertheless, artificial neural networks, inspired in brain circuits,…

Neurons and Cognition · Quantitative Biology 2018-06-28 Gianluca Susi , Luis Anton Toro , Leonides Canuet , Maria Eugenia Lopez , Fernando Maestu , Claudio R. Mirasso , Ernesto Pereda

We present design and implementation of a novel neural network potential (NNP) and its combination with an electrostatic embedding scheme, commonly used within the context of hybrid quantum-mechanical/molecular-mechanical (QM/MM)…

Chemical Physics · Physics 2025-08-15 Felix Pultar , Moritz Thuerlemann , Igor Gordiy , Eva Doloszeski , Sereina Riniker

In this work, we introduce Adapt & Align, a method for continual learning of neural networks by aligning latent representations in generative models. Neural Networks suffer from abrupt loss in performance when retrained with additional…

Machine Learning · Computer Science 2023-12-22 Kamil Deja , Bartosz Cywiński , Jan Rybarczyk , Tomasz Trzciński

Neural models for NLP typically use large numbers of parameters to reach state-of-the-art performance, which can lead to excessive memory usage and increased runtime. We present a structure learning method for learning sparse,…

Computation and Language · Computer Science 2019-09-09 Jesse Dodge , Roy Schwartz , Hao Peng , Noah A. Smith

Active Learning (AL) is increasingly important in a broad range of applications. Two main AL principles to obtain accurate classification with few labeled data are refinement of the current decision boundary and exploration of poorly…

Machine Learning · Computer Science 2012-10-19 Jens Roeder , Boaz Nadler , Kevin Kunzmann , Fred A. Hamprecht
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