Related papers: An Evolver program for weighted Steiner trees
We develop an efficient stochastic variance reduced gradient descent algorithm to solve the affine rank minimization problem consists of finding a matrix of minimum rank from linear measurements. The proposed algorithm as a stochastic…
The Steiner tree problem is one of the classic and most fundamental $\mathcal{NP}$-hard problems: given an arbitrary weighted graph, seek a minimum-cost tree spanning a given subset of the vertices (terminals). Byrka \emph{et al}. proposed…
We propose polynomial-time algorithms that sparsify planar and bounded-genus graphs while preserving optimal or near-optimal solutions to Steiner problems. Our main contribution is a polynomial-time algorithm that, given an unweighted graph…
Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
In this work we introduce an implementation for which machine learning techniques helped improve the overall performance of an evolutionary algorithm for an optimization problem, namely a variation of robust minimum-cost path in graphs. In…
In this paper, we introduce GrAVITree, a tree- and sampling-based algorithm to compute a near-optimal value function and corresponding feedback policy for indefinite time-horizon, terminal state-constrained nonlinear optimal control…
This paper studies a 4-approximation algorithm for k-prize collecting Steiner tree problems. This problem generalizes both k-minimum spanning tree problems and prize collecting Steiner tree problems. Our proposed algorithm employs two…
In this paper, we present an exact algorithm for the Steiner tree problem. The algorithm is based on certain pre-computed index structures. Our algorithm offers a practical solution for the Steiner tree problems on graphs of large size and…
Finding a minimum spanning tree (MST) for $n$ points in an arbitrary metric space is a fundamental primitive for hierarchical clustering and many other ML tasks, but this takes $\Omega(n^2)$ time to even approximate. We introduce a…
In the Steiner Forest problem, we are given a graph and a collection of source-sink pairs, and the goal is to find a subgraph of minimum total length such that all pairs are connected. The problem is APX-Hard and can be 2-approximated by,…
This paper introduces the Partition Tree Weighting technique, an efficient meta-algorithm for piecewise stationary sources. The technique works by performing Bayesian model averaging over a large class of possible partitions of the data…
This paper presents an efficient algorithm for retrieving from a database of trees, all trees that match a given query tree approximately, that is, within a certain error tolerance. It has natural language processing applications in…
We study the Steiner Tree problem, in which a set of terminal vertices needs to be connected in the cheapest possible way in an edge-weighted graph. This problem has been extensively studied from the viewpoint of approximation and also…
We consider Directed Steiner Forest (DSF), a fundamental problem in network design. The input to DSF is a directed edge-weighted graph $G = (V, E)$ and a collection of vertex pairs $\{(s_i, t_i)\}_{i \in [k]}$. The goal is to find a minimum…
For many linear and nonlinear systems that arise from the discretization of partial differential equations the construction of an efficient multigrid solver is a challenging task. Here we present a novel approach for the optimization of…
A new Chase-type soft-decision decoding algorithm for Reed-Solomon codes is proposed, referred to as tree-based Chase-type algorithm}. The proposed tree-based Chase-type algorithm takes the set of all vectors as the set of testing patterns,…
Let G = (V, E) be a directed and weighted graph with vertex set V of size n and edge set E of size m, such that each edge (u, v) \in E has a real-valued weight w(u, c). An arborescence in G is a subgraph T = (V, E') such that for a vertex u…
Bayesian inference problems require sampling or approximating high-dimensional probability distributions. The focus of this paper is on the recently introduced Stein variational gradient descent methodology, a class of algorithms that rely…
Python implementation of selected weighted graph algorithms is presented. The minimal graph interface is defined together with several classes implementing this interface. Graph nodes can be any hashable Python objects. Directed edges are…