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Particle tracking in biological imaging is concerned with reconstructing the trajectories, locations, or velocities of the targeting particles. The standard approach of particle tracking consists of two steps: first reconstructing…

Signal Processing · Electrical Eng. & Systems 2022-04-11 Ping Liu , Habib Ammari

Optical tracking in vivo experiments reveal that diffusion of particles in biological cells is strongly enhanced in the presence of ATP and the experimental data for animal cells could previously be reproduced within a phenomenological…

Soft Condensed Matter · Physics 2017-03-22 Kento Yasuda , Ryuichi Okamoto , Shigeyuki Komura , Alexander S. Mikhailov

Membrane protein transporters alternate their substrate-binding sites between the extracellular and cytosolic side of the membrane according to the alternating access mechanism. Inspired by this intriguing mechanism devised by nature, we…

Biological Physics · Physics 2017-11-08 Yizhou Tan , Leonardo Dagdug , Jannes Gladrow , Ulrich F. Keyser , Stefano Pagliara

We present a deformation-dependent propulsion phenomenon for soft particles such as cells in microchannels. It is based on a broken time reversal symmetry generated by a fast forward and slow backward motion of a fluid which does not…

Soft Condensed Matter · Physics 2022-02-22 Winfried Schmidt , Andre Förtsch , Matthias Laumann , Walter Zimmermann

Contrasting the well explored problem on how to steer a macroscopic agent like an airplane or a moon lander to optimally reach a target, "optimal microswimming", i.e. the quest for the optimal navigation strategy for microswimmers, remains…

Fluid Dynamics · Physics 2022-05-10 Abdallah Daddi-Moussa-Ider , Hartmut Löwen , Benno Liebchen

Cells control the size and organization of biomolecular condensates formed by liquid-liquid phase separation (LLPS), but multiple mechanisms likely contribute to this control and remain to be fully elucidated. Here we propose a…

Biological Physics · Physics 2026-04-10 Le Qiao , Peter Gispert , Lukas S. Stelzl , Friederike Schmid

Microrheology is the study of the properties of a complex fluid through the diffusion dynamics of small particles, typically latex beads, moving through that material. Currently, it is the dominant technique in the study of the physical…

Methodology · Statistics 2012-02-13 Gustavo Didier , Scott McKinley , David B. Hill , John Fricks

Collective transport through channels shows surprising properties under one-dimensional confinement: particles in a single file exhibit sub-diffusive behavior, while liquid confinement causes distance-independent correlations between the…

Soft Condensed Matter · Physics 2019-06-05 Karolis Misiunas , Ulrich F. Keyser

Understanding flow and transport of bacteria in porous media is crucial to technologies such as bioremediation, biomineralization or enhanced oil recovery. While physicochemical bacteria filtration is well-documented, recent studies showed…

Soft Condensed Matter · Physics 2022-08-24 Marco Dentz , Adama Creppy , Carine Douarche , Eric Clément , Harold Auradou

In this paper we are interested in optimizing the shape of multi-flagellated helical microswimmers. Mimicking the propagation of helical waves along the flagella, they self-propel by rotating their tails. The swimmer's dynamics is computed…

Large-scale environmental sensing with a finite number of mobile sensors is a challenging task that requires a lot of resources and time. This is especially true when features in the environment are spatiotemporally changing with unknown or…

Robotics · Computer Science 2022-03-03 Sachin Shriwastav , Gregory Snyder , Zhuoyuan Song

We use a one dimensional symmetric exclusion model to study pressure and osmosis driven flows through molecular-sized channels, such as biological membrane channels and zeolite pores. Analytic expressions are found for the steady-state flow…

Soft Condensed Matter · Physics 2008-02-03 Tom Chou

We use Stokesian Dynamics simulations to study the microscopic motion of particles suspended in fluids passing through porous media. We construct model porous media with fixed spherical particles, and allow mobile ones to move through this…

Disordered Systems and Neural Networks · Physics 2009-10-31 Jysoo Lee , Joel Koplik

Visual tracking is challenging due to image variations caused by various factors, such as object deformation, scale change, illumination change and occlusion. Given the superior tracking performance of human visual system (HVS), an ideal…

Computer Vision and Pattern Recognition · Computer Science 2019-04-24 Bolun Cai , Xiangmin Xu , Xiaofen Xing , Kui Jia , Jie Miao , Dacheng Tao

Networks of interconnected resistors, springs and beams, or pores are standard models of studying scalar and vector transport processes in heterogeneous materials and media, such as fluid flow in porous media, and conduction, deformations,…

Computational Physics · Physics 2019-08-12 Hassan Dashtian , Muhammad Sahimi

This paper presents experimental results about transport of dilute suspensions of nano-objects in silicon-glass micrometric and sub-micrometric channels. Two kinds of objects are used: solid, rigid latex beads and spherical capsule-shaped,…

Capillary-driven transport offers a simple, self-sustained alternative to externally pumped microfluidic systems, yet achieving precise control of such flows remains challenging. We experimentally and theoretically investigate capillary…

Fluid Dynamics · Physics 2026-03-03 Harsha Desu , Niladri S. Satpathi , Lokesh Malik , Ashis K. Sen

Superhydrophobic one-dimensional surfaces reduce drag and generate transverse hydrodynamic phenomena by combining hydrophobicity and roughness to trap gas bubbles in microscopic textures. Recent works in this area have focused on specific…

Fluid Dynamics · Physics 2014-01-23 Tatiana V. Nizkaya , Evgeny S. Asmolov , Olga I. Vinogradova

Microorganisms, such as E.Coli, are known to display upstream behavior and respond rheotactically to shear flows. In particular, E.Coli suspensions have been shown to display strong sensitivity to spatial constrictions, leading to an…

Soft Condensed Matter · Physics 2024-01-24 Armin Maleki , Malihe Ghodrat , Ignacio Pagonabarraga

We characterize the motion of charged as well as neutral tracers, in an electrolyte embedded in a varying section channel. We exploit a set of systematic approximations that allows us to simplify the problem, yet capturing the essential of…

Soft Condensed Matter · Physics 2015-05-20 Paolo Malgaretti , Ignacio Pagonabarraga , J. Miguel Rubi