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In the coarse grained Brownian Dynamics simulation method the many solvent molecules are replaced by random thermal kicks and an effective friction acting on the particles of interest. For Brownian Dynamics the friction has to be so strong…

Biomolecules · Quantitative Biology 2015-05-13 Uwe Winter , Tihamer Geyer

Active emulsions can spontaneously form self-propelled droplets or phoretic micropumps. It has been predicted that the interaction with their self-generated chemical fields can lead to multistable higher-order flows and chemodynamic…

We investigate the influence of external forces on the collective dynamics of interacting active Brownian particles in two as well as three spatial dimensions. Via explicit coarse graining, we derive predictive models that are applicable…

Soft Condensed Matter · Physics 2022-02-10 Jens Bickmann , Stephan Bröker , Raphael Wittkowski

The hydrodynamic interactions of a suspension of self-propelled particles are studied using a direct numerical simulation method which simultaneously solves for the host fluid and the swimming particles. A modified version of the "Smoothed…

Soft Condensed Matter · Physics 2013-01-15 John J. Molina , Yasuya Nakayama , Ryoichi Yamamoto

In the Ermak-McCammon algorithm for Brownian Dynamics, the hydrodynamic interactions (HI) between N spherical particles are described by a 3N x 3N diffusion tensor. This tensor has to be factorized at each timestep with a runtime of O(N^3),…

Soft Condensed Matter · Physics 2009-11-13 Tihamer Geyer , Uwe Winter

The interfacial behavior of active Brownian polymer (ABPO) is studied by Langevin dynamics simulations. On the dependence of adsorption strength and activity characterized by Peclet number (Pe), the polymer displays two typical states on…

Soft Condensed Matter · Physics 2024-08-27 Guo-qiang Feng , Wen-de Tian

Systems comprised of self-steering active Brownian particles are studied via simulations for a minimal cognitive flocking model. The dynamics of the active Brownian particles is extended by an orientational response with limited…

Soft Condensed Matter · Physics 2024-06-04 Rajendra Singh Negi , Roland G. Winkler , Gerhard Gompper

While the behavior of vesicles in thermodynamic equilibrium has been studied extensively, how active forces control vesicle shape transformations is not understood. Here, we combine theory and simulations to study the shape behavior of…

Soft Condensed Matter · Physics 2019-10-09 Yao Li , Pieter Rein ten Wolde

We computationally study suspensions of slow and fast active Brownian particles that have undergone motility induced phase separation and are at steady state. Such mixtures, of varying non-zero activity, remain largely unexplored even…

Soft Condensed Matter · Physics 2024-07-11 Nicholas J Lauersdorf , Ehssan Nazockdast , Daphne Klotsa

We simulate with hydrodynamics a suspension of active disks squirming through a Newtonian fluid. We explore numerically the full range of squirmer area fractions from dilute to close packed and show that "motility induced phase separation"…

Soft Condensed Matter · Physics 2015-06-11 Ricard Matas-Navarro , Ramin Golestanian , Tanniemola B. Liverpool , Suzanne M. Fielding

By means of multicanonical computer simulations, we investigate thermodynamic properties of the aggregation of interacting semiflexible polymers. We analyze a mesoscopic bead-stick model, where nonbonded monomers interact via Lennard-Jones…

Soft Condensed Matter · Physics 2015-05-28 Christoph Junghans , Michael Bachmann , Wolfhard Janke

In this paper, we report a Brownian dynamics simulation of the mobility-induced phase separation which occurs in a two-dimensional binary mixture of active soft Brownian particles, whose interactions are modeled by non-additive…

Soft Condensed Matter · Physics 2026-01-23 D. Jiménez-Flores , A. Rodríguez-Rivas , J. M. Romero-Enrique

The transport of active particles may occur in complex environments, in which it emerges from the interplay between the mobility of the active components and the quenched disorder of the environment. Here we explore structural and dynamical…

Soft Condensed Matter · Physics 2023-03-31 Fergus J. Moore , John Russo Tanniemola B. Liverpool , C. Patrick Royall

The interplay between concentration, flow, hydrodynamic interactions (HI), and topological interactions governing semidilute polymer dynamics in strong flows are challenging to characterize. Brownian dynamics (BD) simulations are…

Fluid Dynamics · Physics 2019-10-23 Charles D. Young , Charles E. Sing

Confined motions in complex environments are ubiquitous in microbiology. These situations invariably involve the intricate coupling between fluid flow, soft boundaries, surface forces and fluctuations. In the present study, such a coupling…

Soft Condensed Matter · Physics 2024-05-24 Nicolas Fares , Maxime Lavaud , Zaicheng Zhang , Aditya Jha , Yacine Amarouchene , Thomas Salez

We consider a mixture of passive (i.e., Brownian) and active (e.g., bacterial or colloidal swimmers) particles, and analyze the stability conditions of either uniformly mixed or phase segregated steady states consisting of phases enriched…

Statistical Mechanics · Physics 2015-09-21 Alexander Y. Grosberg , Jean-François Joanny

We investigate the effect of hydrodynamic interactions on the non-equilibrium drift dynamics of an ideal flexible polymer pulled by a constant force applied at one end of the polymer using the perturbation theory and the renormalization…

Statistical Mechanics · Physics 2009-11-13 Semjon Stepanow , Norio Kikuchi

Even though the Dissipative Particle Dynamics (DPD) has shown its worth in a variety of research areas, it has been rarely used for polymer dynamics, particularly in dilute and semi-dilute conditions and under imposed flow fields. For such…

Soft Condensed Matter · Physics 2024-12-23 Sanjay Jana , Venkata Siva Krishna , Praphul Kumar , Indranil Saha Dalal

In the high persistence regime of non-inertial active Brownian particles (ABP), polarization becomes a relevant dynamical field. Based on a recently proposed kinetic description for ABP, we derive Navier-Stokes-like equations for the…

Soft Condensed Matter · Physics 2025-10-21 Martín Pinto-Goldberg , Rodrigo Soto

We study the evaporation-induced stratification of a mixture of short and long polymer chains in a drying droplet using molecular simulations. We systematically investigate the effects of hydrodynamic interactions (HI) on this process by…

Soft Condensed Matter · Physics 2020-08-26 Michael P. Howard , Arash Nikoubashman