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We introduce a quasisymmetric refinement of Stanley's chromatic symmetric function. We derive refinements of both Gasharov's Schur-basis expansion of the chromatic symmetric function and Chow's expansion in Gessel's basis of fundamental…
We introduce a simple algorithm for reconstructing phylogenies from multiple gene trees in the presence of incomplete lineage sorting, that is, when the topology of the gene trees may differ from that of the species tree. We show that our…
We study the chromatic symmetric function on graphs, and show that its kernel is spanned by the modular relations. We generalize this result to the chromatic quasisymmetric function on hypergraphic polytopes, a family of generalized…
We propose a new arithmetic for non-empty rooted unordered trees simply called trees. After discussing tree representation and enumeration, we define the operations of tree addition, multiplication and stretch, prove their properties, and…
We present a streamlined exposition of a construction by R. Chen, A. Poulin, R. Tao, and A. Tserunyan, which proves the treeability of equivalence relations generated by any locally-finite Borel graph such that each component is a…
Persistence diagrams, combining geometry and topology for an effective shape description used in pattern recognition, have already proven to be an effective tool for shape representation with respect to a certainfiltering function.…
We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
We give closed form expressions for the numbers of multi-rooted plane trees with specified degrees of root vertices. This results in an infinite number of integer sequences some of which are known to have an alternative interpretation. We…
We prove that every graph which admits a tree-decomposition into finite parts has a rooted tree-decomposition into finite parts that is linked, tight and componental. As an application, we obtain that every graph without half-grid minor has…
We call a tree $T$ is \emph{even} if every pair of its leaves is joined by a path of even length. Jackson and Yoshimoto~[J. Graph Theory, 2024] conjectured that every $r$-regular nonbipartite connected graph $G$ has a spanning even tree.…
In this paper, we survey some properties, encoding, and bijections involving combinatorial maps, double occurrence words, and chord diagrams. We particularly study quasi-trees from a purely combinatorial point of view and derive a…
We characterize the compatibility of a collection of unrooted phylogenetic trees as a question of determining whether a graph derived from these trees --- the display graph --- has a specific kind of triangulation, which we call legal. Our…
In this paper we discuss reconstruction problems for graphs. We develop some new ideas like isomorphic extension of isomorphic graphs, partitioning of vertex sets into sets of equivalent points, subdeck property, etc. and develop an…
In 1995, Stanley introduced the chromatic symmetric function of a graph, which specializes to its chromatic polynomial, and which has been the focus of intense research. In 2017, Shareshian, Wachs, and Ellzey defined a refinement of this…
In this paper, we investigate the computational complexity of subgraph reconfiguration problems in directed graphs. More specifically, we focus on the problem of reconfiguring arborescences in a digraph, where an arborescence is a directed…
We develop a quasisymmetric analogue of the combinatorial theory of Schubert polynomials and the associated divided difference operators. Our counterparts are "forest polynomials", and a new family of linear operators, whose theory of…
For a tree $T$, consider its smallest subtree $T^{\circ}$ containing all vertices of degree at least $3$. Then the remaining edges of $T$ lie on disjoint paths each with one endpoint on $T^{\circ}$. We show that the chromatic symmetric…
We study the portraits of isometries of rooted trees - the labelling of the tree, at each vertex, by the permutation of its descendants - in terms of languages. We characterize regularly branched self-similar groups in terms of…
This paper provides answers to questions regarding the almost sure limiting behavior of rooted, binary tree-structured rules for regression. Examples show that questions raised by Gordon and Olshen in 1984 have negative answers. For these…