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Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

Human-Computer Interaction · Computer Science 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

Machine Learning · Statistics 2020-09-21 Leland McInnes , John Healy , James Melville

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

Machine Learning · Computer Science 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

In the BCI field, introspection and interpretation of brain signals are desired for providing feedback or to guide rapid paradigm prototyping but are challenging due to the high noise level and dimensionality of the signals. Deep neural…

Machine Learning · Computer Science 2024-11-05 Peter Wassenaar , Pierre Guetschel , Michael Tangermann

We introduce a fusion of GPU accelerated primal heuristics for Mixed Integer Programming. Leveraging GPU acceleration enables exploration of larger search regions and faster iterations. A GPU-accelerated PDLP serves as an approximate LP…

Optimization and Control · Mathematics 2025-10-31 Akif Çördük , Piotr Sielski , Alice Boucher , Kumar Aatish

The Random Phase Approximation (RPA) for correlation energy in the grid-based projector augmented wave (gpaw) code is accelerated by porting to the Graphics Processing Unit (GPU) architecture. The acceleration is achieved by grouping…

Computational Physics · Physics 2013-07-31 Jun Yan , Lin Li , Christopher O'Grady

Data augmentation techniques play an important role in enhancing the performance of deep learning models. Despite their proven benefits in computer vision tasks, their application in the other domains remains limited. This paper proposes a…

Machine Learning · Computer Science 2024-01-23 Yousef El-Laham , Elizabeth Fons , Dillon Daudert , Svitlana Vyetrenko

Finding the sparsest solution to the underdetermined system $\mathbf{y}=\mathbf{Ax}$, given a tolerance, is known to be NP-hard. Many approximate solutions to this problem exist, and Orthogonal Matching Pursuit (OMP) is one of the most…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-01 Ariel Lubonja , Sebastian Kazmarek Praesius , Trac Duy Tran

A projection-based immersed boundary method is dominated by sparse linear algebra routines. Using the open-source Cusp library, we observe a speedup (with respect to a single CPU core) which reflects the constraints of a bandwidth-dominated…

Computational Engineering, Finance, and Science · Computer Science 2016-04-12 Simon K Layton , Anush Krishnan , Lorena A. Barba

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

Machine Learning · Computer Science 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

UMAP (Uniform Manifold Approximation and Projection) is among the most widely used algorithms for non linear dimensionality reduction and data visualisation. Despite its popularity, and despite being presented through the lens of algebraic…

Machine Learning · Computer Science 2026-02-13 Yang Yang

The success of machine learning algorithms heavily relies on the quality of samples and the accuracy of their corresponding labels. However, building and maintaining large, high-quality datasets is an enormous task. This is especially true…

Image and Video Processing · Electrical Eng. & Systems 2024-08-02 Mohammad Tariqul Islam , Jason W. Fleischer

We consider the problem of sparse signal recovery from a small number of random projections (measurements). This is a well known NP-hard to solve combinatorial optimization problem. A frequently used approach is based on greedy iterative…

Quantitative Methods · Quantitative Biology 2009-01-25 M. Andrecut

Although the matrix multiplication plays a vital role in computational linear algebra, there are few efficient solutions for matrix multiplication of the near-sparse matrices. The Sparse Approximate Matrix Multiply (SpAMM) is one of the…

Performance · Computer Science 2022-10-25 Xiaoyan Liu , Yi Liu , Ming Dun , Bohong Yin , Hailong Yang , Zhongzhi Luan , Depei Qian

Nowadays, the High Performance Computing is part of the context of embedded systems. Graphics Processing Units (GPUs) are more and more used in acceleration of the most part of algorithms and applications. Over the past years, not many…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-05-24 Antonio Wendell De Oliveira Rodrigues , Frédéric Guyomarc'H , Jean-Luc Dekeyser

In recent years graphical processing units (GPUs) have become a powerful tool in scientific computing. Their potential to speed up highly parallel applications brings the power of high performance computing to a wider range of users.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-26 Uldis Locans , Andreas Adelmann , Andreas Suter , Jannis Fischer , Werner Lustermann , Gunther Dissertori , Qiulin Wang

Planning long-horizon robot manipulation requires making discrete decisions about which objects to interact with and continuous decisions about how to interact with them. A robot planner must select grasps, placements, and motions that are…

We propose a generic algorithmic building block to accelerate training of machine learning models on heterogeneous compute systems. Our scheme allows to efficiently employ compute accelerators such as GPUs and FPGAs for the training of…

Machine Learning · Computer Science 2017-11-08 Celestine Dünner , Thomas Parnell , Martin Jaggi

UMAP is a popular neighborhood-preserving dimension reduction (DR) algorithm. However, its application for graph drawing has not been evaluated. Moreover, a naive application of UMAP to graph drawing would include O(nm) time all-pair…

Data Structures and Algorithms · Computer Science 2025-09-25 Amyra Meidiana , Seok-Hee Hong

We introduce FastGraph, a novel GPU-optimized k-nearest neighbor algorithm specifically designed to accelerate graph construction in low-dimensional spaces (2-10 dimensions), critical for high-performance graph neural networks. Our method…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-14 Aarush Agarwal , Raymond He , Jan Kieseler , Matteo Cremonesi , Shah Rukh Qasim
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