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Dust coagulation in interstellar space and protoplanetary disks is usually treated as one of 2 extreme cases: Particle-Cluster Aggregation and Cluster-Cluster Aggregation. In this paper we study the process of hierarchical growth, where…

Earth and Planetary Astrophysics · Physics 2016-11-02 Carsten Dominik , Dominik Paszun , Herman Borel

Coagulation-fragmentation processes describe the stochastic association and dissociation of particles in clusters. Cluster dynamics with cluster-cluster interactions for a finite number of particles has recently attracted attention…

Probability · Mathematics 2016-11-22 Nathanael Hoze , David Holcman

The properties of small clusters can differ dramatically from the bulk phases of the same constituents. In equilibrium, cluster assembly has been recently explored, whereas out of equilibrium, the physical principles of clustering remain…

Soft Condensed Matter · Physics 2019-03-22 Melody X. Lim , Anton Souslov , Vincenzo Vitelli , Heinrich M. Jaeger

Cells coexist together in colonies or as tissues. Their behaviour is controlled by an interplay between intercellular forces and biochemical regulation. We develop a simple model of the cell cycle, the fundamental regulatory network…

Biological Physics · Physics 2021-08-04 Jintao Li , Simon K. Schnyder , Matthew S. Turner , Ryoichi Yamamoto

Cell sorting, the segregation of cells with different properties into distinct domains, is a key phenomenon in biological processes such as embryogenesis. We use a phase-field model of a confluent cell layer to study the role of activity in…

Biological Physics · Physics 2024-03-05 James N. Graham , Guanming Zhang , Julia M. Yeomans

The aggregation of particles in the free molecular regime is determined approximately for situations with a high degree of translational energy equilibration. The mean particle sizes develop linearly in time. Scaling relations are used to…

Atomic and Molecular Clusters · Physics 2024-01-10 Klavs Hansen

Evolution of the spatial arrangement of cells in a primary culture of cardiac tissue derived from newborn rats was studied experimentally over extended period. It was found that cells attract each other spontaneously to form a clustered…

Cell Behavior · Quantitative Biology 2009-11-13 Takahiro Harada , Akihiro Isomura , Kenichi Yoshikawa

Biological cells use droplets to separate components and spatially control their interior. Experiments demonstrate that the complex, crowded cellular environment affects the droplet arrangement and their sizes. To understand this behavior,…

Soft Condensed Matter · Physics 2021-10-27 Estefania Vidal-Henriquez , David Zwicker

The charge on an aggregate immersed in a plasma environment distributes itself over the aggregate's surface; this can be approximated theoretically by assuming a multipole distribution. The dipole-dipole (or higher order) charge…

Plasma Physics · Physics 2015-06-03 Lorin S. Matthews , Victor Land , Qianyu Ma , Jonathan D. Perry , Truell W. Hyde

The control of the thermocapillary assembly of colloidal particle clusters is important for a variety of applications, including the creation of photonic crystals for microelectronics and optoelectronics, membrane formation for…

Soft Condensed Matter · Physics 2026-03-20 Kristina N. Kondrashova , Konstantin S. Kolegov , Irina V. Vodolazskaya

Understanding how monomeric proteins fold under in vitro conditions is crucial to describing their functions in the cellular context. Significant advances both in theory and experiments have resulted in a conceptual framework for describing…

Soft Condensed Matter · Physics 2010-07-20 D. Thirumalai , Edward P. O'Brien , Greg Morrison , Changbong Hyeon

Understanding how growth induces form is a longstanding biological question. Many studies concentrated on the shapes of plant cells, fungi or bacteria. Some others have shown the importance of the mechanical properties of bacterial walls…

Biological Physics · Physics 2007-05-23 Arezki Boudaoud

Epithelial cell clusters often move collectively on a substrate. Mechanical signals play a major role in organizing this behavior. There are a number of experimental observations in these systems which await a comprehensive explanation.…

Biological Physics · Physics 2021-01-22 Youyuan Deng , Herbert Levine , Xiaoming Mao , Leonard M. Sander

Nanoparticles introduced in living cells are capable of strongly promoting the aggregation of peptides and proteins. We use here molecular dynamics simulations to characterise in detail the process by which nanoparticle surfaces catalyse…

Biomolecules · Quantitative Biology 2010-06-08 Stefan Auer , Antonio Trovato , Michele Vendruscolo

Ample experimental evidence has been accumulated demonstrating that the formation of monodispersed colloids proceeds through a more complex mechanism, than the generally excepted diffusional "burst nucleation" process. Instead, the…

Materials Science · Physics 2010-09-22 Jongsoon Park , Vladimir Privman , Egon Matijevic

Cells regulate gene expression in part by forming DNA-protein condensates in the nucleus. While existing theories describe the equilibrium size and stability of such condensates, their dynamics remain less understood. Here, we use…

Soft Condensed Matter · Physics 2025-12-22 Adam R. Lamson , Mohammadhossein Firouznia , Michael J. Shelley

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

Populations and Evolution · Quantitative Biology 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

We consider diffusion limited aggregation of particles of two different kinds. It is assumed that a particle of one kind may adhere only to another particle of the same kind. The particles aggregate on a linear substrate which consists of…

Other Condensed Matter · Physics 2015-05-20 E. B. Postnikov , A. B. Ryabov , A. Loskutov

Several neurological disorders are associated with the aggregation of aberrant proteins, often localized in intracellular organelles such as the endoplasmic reticulum. Here we study protein aggregation kinetics by mean-field reactions and…

Neurons and Cognition · Quantitative Biology 2014-04-17 Z. Budrikis , G. Costantini , C. A. La Porta , S. Zapperi

Autocatalytic fibril nucleation has recently been proposed to be a determining factor for the spread of neurodegenerative diseases, but the same process could also be exploited to amplify minute quantities of protein aggregates in a…

Quantitative Methods · Quantitative Biology 2016-09-23 Giulio Costantini , Zoe Budrikis , Alessandro Taloni , Alexander K. Buell , Stefano Zapperi , Caterina A. M. La Porta