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Related papers: BERT Learns (and Teaches) Chemistry

200 papers

The use of machine learning in chemistry has become a common practice. At the same time, despite the success of modern machine learning methods, the lack of data limits their use. Using a transfer learning methodology can help solve this…

Machine Learning · Computer Science 2021-07-26 Kirill Karpov , Artem Mitrofanov , Vadim Korolev , Valery Tkachenko

Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN)…

Machine Learning · Computer Science 2021-07-29 Jianwen Chen , Shuangjia Zheng , Ying Song , Jiahua Rao , Yuedong Yang

In recent years, molecular representation learning has emerged as a key area of focus in various chemical tasks. However, many existing models fail to fully consider the geometric information of molecular structures, resulting in less…

Machine Learning · Computer Science 2023-06-29 Bumju Kwak , Jiwon Park , Taewon Kang , Jeonghee Jo , Byunghan Lee , Sungroh Yoon

Initially introduced as a machine translation model, the Transformer architecture has now become the foundation for modern deep learning architecture, with applications in a wide range of fields, from computer vision to natural language…

Computation and Language · Computer Science 2024-06-21 Martin Courtois , Malte Ostendorff , Leonhard Hennig , Georg Rehm

Today, the acquisition of various behavioral log data has enabled deeper understanding of customer preferences and future behaviors in the marketing field. In particular, multimodal deep learning has achieved highly accurate predictions by…

Computational Engineering, Finance, and Science · Computer Science 2024-05-14 Junichiro Niimi

Most state-of-the-art techniques for Language Models (LMs) today rely on transformer-based architectures and their ubiquitous attention mechanism. However, the exponential growth in computational requirements with longer input sequences…

Computation and Language · Computer Science 2024-11-26 Kaustubh Ponkshe , Venkatapathy Subramanian , Natwar Modani , Ganesh Ramakrishnan

Education systems are dynamically changing to accommodate technological advances, industrial and societal needs, and to enhance students' learning journeys. Curriculum specialists and educators constantly revise taught subjects across…

Computers and Society · Computer Science 2024-03-12 Tamador Alkhidir , Edmond Awad , Aamena Alshamsi

We take a deep look into the behavior of self-attention heads in the transformer architecture. In light of recent work discouraging the use of attention distributions for explaining a model's behavior, we show that attention distributions…

Machine Learning · Computer Science 2021-01-15 Damian Pascual , Gino Brunner , Roger Wattenhofer

An attention matrix of a transformer self-attention sublayer can provably be decomposed into two components and only one of them (effective attention) contributes to the model output. This leads us to ask whether visualizing effective…

Computation and Language · Computer Science 2021-05-20 Kaiser Sun , Ana Marasović

Educational process data, i.e., logs of detailed student activities in computerized or online learning platforms, has the potential to offer deep insights into how students learn. One can use process data for many downstream tasks such as…

Machine Learning · Computer Science 2022-04-29 Alexander Scarlatos , Christopher Brinton , Andrew Lan

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

The dominant graph neural networks (GNNs) over-rely on the graph links, several serious performance problems with which have been witnessed already, e.g., suspended animation problem and over-smoothing problem. What's more, the inherently…

Machine Learning · Computer Science 2020-01-23 Jiawei Zhang , Haopeng Zhang , Congying Xia , Li Sun

Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a…

Computation and Language · Computer Science 2020-11-26 Walid Hafiane , Joel Legrand , Yannick Toussaint , Adrien Coulet

We investigate the self-attention mechanism of BERT in a fine-tuning scenario for the classification of scientific articles over a taxonomy of research disciplines. We observe how self-attention focuses on words that are highly related to…

Computation and Language · Computer Science 2021-01-21 Andres Garcia-Silva , Jose Manuel Gomez-Perez

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and…

Computation and Language · Computer Science 2021-02-23 Tingyu Xia , Yue Wang , Yuan Tian , Yi Chang

Machine based text comprehension has always been a significant research field in natural language processing. Once a full understanding of the text context and semantics is achieved, a deep learning model can be trained to solve a large…

Computation and Language · Computer Science 2020-09-03 Omar Mossad , Amgad Ahmed , Anandharaju Raju , Hari Karthikeyan , Zayed Ahmed

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Large language models can produce powerful contextual representations that lead to improvements across many NLP tasks. Since these models are typically guided by a sequence of learned self attention mechanisms and may comprise undesired…

Computation and Language · Computer Science 2019-10-14 Benjamin Hoover , Hendrik Strobelt , Sebastian Gehrmann

Timely feedback is an important part of teaching and learning. Here we describe how a readily available neural network transformer (machine-learning) model (BERT) can be used to give feedback on the structure of the response to an…

Computation and Language · Computer Science 2023-05-31 Oscar Morris , Russell Morris

Pre-trained language models have recently contributed to significant advances in NLP tasks. Recently, multi-modal versions of BERT have been developed, using heavy pre-training relying on vast corpora of aligned textual and image data,…

Computation and Language · Computer Science 2020-12-17 Thomas Scialom , Patrick Bordes , Paul-Alexis Dray , Jacopo Staiano , Patrick Gallinari