Related papers: Phenotypic variability in Italian rice germplasm
The widely used genetic pleiotropic analysis of multiple phenotypes are often designed for examining the relationship between common variants and a few phenotypes. They are not suited for both high dimensional phenotypes and high…
We introduce a simple yet effective early fusion method for crop yield prediction that handles multiple input modalities with different temporal and spatial resolutions. We use high-resolution crop yield maps as ground truth data to train…
High-throughput pheno-, geno-, and envirotyping allows characterization of plant genotypes and the trials they are evaluated in, producing different types of data. These different data modalities can be integrated into statistical or…
For a global breeding organization, identifying the next generation of superior crops is vital for its success. Recognizing new genetic varieties requires years of in-field testing to gather data about the crop's yield, pest resistance,…
Ecological selection is a major driver of community assembly. Selection is classified as stabilizing when species with intermediate trait values gain the highest reproductive success, whereas selection is considered directional when fitness…
The advent of plant phenomics, coupled with the wealth of genotypic data generated by next-generation sequencing technologies, provides exciting new resources for investigations into and improvement of complex traits. However, these new…
Organismal phenotypes emerge from a complex set of genotypic interactions. While technological advances in sequencing provide a quantitative description of an organism's genotype, characterization of an organism's physical phenotype lags…
Rice has been one of the staple foods that contribute significantly to human food supplies. Numerous rice varieties have been cultivated, imported, and exported worldwide. Different rice varieties could be mixed during rice production and…
Cold plasma (CP) is an eco-friendly method to enhance seed germination, yet outcomes remain difficult to predict due to complex seed--plasma--environment interactions. This study introduces the first machine learning framework to forecast…
Identifying genetic interactions for a given microorganism such as yeast is difficult. Quantitative Fitness Analysis (QFA) is a high-throughput experimental and computational methodology for quantifying the fitness of microbial cultures.…
Durum wheat has been cultivated since the beginning of crop domestication, occupying now the tenth ranking among the global most significant cultivated crops. Despite the fact that, the extent of the crop genetic diversity has not yet fully…
The emerging field of high-throughput compartmentalized in vitro evolution is a promising new approach to protein engineering. In these experiments, libraries of mutant genotypes are randomly distributed and expressed in microscopic…
Cultural traits such as words, names, decorative styles, and technical standards often assume arbitrary values and are thought to evolve neutrally. But neutral evolution cannot explain why some traits come and go in cycles of popularity…
Accurate and timely crop yield prediction is crucial for global food security and modern agricultural management. Traditional methods often lack the scalability and granularity required for precision farming. This paper introduces FARM:…
Plant phenotyping is a central task in agriculture, as it describes plants' growth stage, development, and other relevant quantities. Robots can help automate this process by accurately estimating plant traits such as the number of leaves,…
Graph-based machine learning methods are useful tools in the identification and prediction of variation in genetic data. In particular, the comprehension of phenotypic effects at the cellular level is an accelerating research area in…
In viticulture the epicuticular wax as the outer layer of the berry skin is known as trait which is correlated to resilience towards Botrytis bunch rot. Traditionally this trait is classified using the OIV descriptor 227 (berry bloom) in a…
Phylogenetic analyses of gene expression have great potential for addressing a wide range of questions. These analyses will, for example, identify genes that have evolutionary shifts in expression that are correlated with evolutionary…
Artificial Intelligence (AI) has emerged as a key driver of precision agriculture, facilitating enhanced crop productivity, optimized resource use, farm sustainability, and informed decision-making. Also, the expansion of genome sequencing…
Rice is the number one staple food in the country, as this serves as the primary livelihood for thousands of Filipino households. However, as the tradition continues, farmers are not familiar with the different types of rice leaf diseases…