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Straight-forward conformation generation models, which generate 3-D structures directly from input molecular graphs, play an important role in various molecular tasks with machine learning, such as 3D-QSAR and virtual screening in drug…

Biomolecules · Quantitative Biology 2022-03-16 Shuwen Yang , Tianyu Wen , Ziyao Li , Guojie Song

A group theoretic framework is introduced that simplifies the description of known quantum error-correcting codes and greatly facilitates the construction of new examples. Codes are given which map 3 qubits to 8 qubits correcting 1 error, 4…

Quantum Physics · Physics 2009-01-23 A. R. Calderbank , E. M Rains , P. W. Shor , N. J. A. Sloane

This article presents a new and efficient alternative to well established algorithms for molecular geometry optimization. The new approach exploits the approximate decoupling of molecular energetics in a curvilinear internal coordinate…

Materials Science · Physics 2007-05-23 Károly Németh , Matt Challacombe

Quantum coherence is an important quantum resource and it is intimately related to various research fields. The geometric coherence is a coherence measure both operationally and geometrically. We study the trade-off relation of geometric…

Quantum Physics · Physics 2023-10-25 Bingyu Hu , Ming-Jing Zhao

Electron tomography is becoming an increasingly important tool in materials science for studying the three-dimensional morphologies and chemical compositions of nanostructures. The image quality obtained by many current algorithms is…

The precise theoretical determination of the geometrical parameters of molecules at the minima of their potential energy surface and of the corresponding vibrational properties are of fundamental importance for the interpretation of…

Strongly Correlated Electrons · Physics 2013-06-19 Andrea Zen , Delyan Zhelyazov , Leonardo Guidoni

A major milestone of quantum error correction is to achieve the fault-tolerance threshold beyond which quantum computers can be made arbitrarily accurate. This requires extraordinary resources and engineering efforts. We show that even…

Quantum Physics · Physics 2021-06-16 Miroslav Urbanek , Benjamin Nachman , Wibe A. de Jong

Quantum information processing faces a significant hurdle: noise. Different noise sources induce varying errors in quantum operations depending on the underlying dynamics. To gain a deeper understanding of these error mechanisms, we…

Quantum Physics · Physics 2025-05-02 Yong-Ju Hai , Junning Li , Junkai Zeng , Xiu-Hao Deng

These notes give an introduction to the quantization procedure called geometric quantization. It gives a definition of the mathematical background for its understanding and introductions to classical and quantum mechanics, to differentiable…

Mathematical Physics · Physics 2020-11-04 Nima Moshayedi

Bayesian optimization is a principled optimization strategy for a black-box objective function. It shows its effectiveness in a wide variety of real-world applications such as scientific discovery and experimental design. In general, the…

Machine Learning · Computer Science 2024-11-11 Jungtaek Kim

Researchers working with mathematical models are often confronted by the related problems of parameter estimation, model validation, and model selection. These are all optimization problems, well-known to be challenging due to…

Quantitative Methods · Quantitative Biology 2016-04-04 Elizabeth Gross , Brent Davis , Kenneth L. Ho , Daniel J. Bates , Heather A. Harrington

This is an expository article aiming to introduce the reader to the underlying mathematics and geometry of quantum error correction. Information stored on quantum particles is subject to noise and interference from the environment. Quantum…

Quantum Physics · Physics 2024-01-10 Simeon Ball , Aina Centelles , Felix Huber

Geometric phases arise in a number of physical situations and often lead to systematic shifts in frequencies or phases measured in precision experiments. We describe, by working through some simple examples, a method to calculate geometric…

Quantum Physics · Physics 2009-12-29 Amar Vutha , David DeMille

Quantum metrology holds the promise of an early practical application of quantum technologies, in which measurements of physical quantities can be made with much greater precision than what is achievable with classical technologies. In this…

Quantum Physics · Physics 2021-01-27 Jasminder S. Sidhu , Pieter Kok

We develop a rigorous framework for modelling the geometry equilibration of crystalline defects. We formulate the equilibration of crystal defects as a variational problems on a discrete energy space and establish qualitatively sharp…

Numerical Analysis · Mathematics 2018-10-16 Huajie Chen , Faizan Q. Nazar , Christoph Ortner

Is perfect error correction always worth the trouble? A framework is presented for the analysis of error detection and correction in multi-level systems of communication that takes into account degrees of freedom attended and ignored by…

Information Theory · Computer Science 2020-01-15 Tom Sgouros

As an approximate theory that is highly regarded for its computational efficiency, geometrical optics (GO) is widely used for modeling waves in various areas of physics. However, GO fails at caustics, which significantly limits its…

Optics · Physics 2021-03-09 N. A. Lopez , I. Y. Dodin

One of the biggest challenges in the research of generative adversarial networks (GANs) is assessing the quality of generated samples and detecting various levels of mode collapse. In this work, we construct a novel measure of performance…

Machine Learning · Computer Science 2018-06-12 Valentin Khrulkov , Ivan Oseledets

Accurately and efficiently predicting the equilibrium geometries of large molecules remains a central challenge in quantum computational chemistry, even with hybrid quantum-classical algorithms. Two major obstacles hinder progress: the…

Quantum Physics · Physics 2026-04-07 Yajie Hao , Qiming Ding , Xiaoting Wang , Xiao Yuan

Understanding the applicability and limitations of electronic-structure methods needs careful and efficient comparison with accurate reference data. Knowledge of the quality and errors of electronic-structure calculations is crucial to…

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