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In many scenarios, especially biomedical applications, the correct delineation of complex fine-scaled structures such as neurons, tissues, and vessels is critical for downstream analysis. Despite the strong predictive power of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-03-25 Xiaoling Hu

Algorithmicists are well-aware that fast dynamic programming algorithms are very often the correct choice when computing on compositional (or even recursive) graphs. Here we initiate the study of how to generalize this folklore intuition to…

Computational Complexity · Computer Science 2023-10-05 Ernst Althaus , Benjamin Merlin Bumpus , James Fairbanks , Daniel Rosiak

We introduce differentiable indirection -- a novel learned primitive that employs differentiable multi-scale lookup tables as an effective substitute for traditional compute and data operations across the graphics pipeline. We demonstrate…

Graphics · Computer Science 2023-11-21 Sayantan Datta , Carl Marshall , Derek Nowrouzezahrai , Zhao Dong , Zhengqin Li

Inferring topological and geometrical information from data can offer an alternative perspective on machine learning problems. Methods from topological data analysis, e.g., persistent homology, enable us to obtain such information,…

Computer Vision and Pattern Recognition · Computer Science 2018-02-19 Christoph Hofer , Roland Kwitt , Marc Niethammer , Andreas Uhl

Topological Data Analysis (TDA) provides a pipeline to extract quantitative topological descriptors from structured objects. This enables the definition of topological loss functions, which assert to what extent a given object exhibits some…

Artificial Intelligence · Computer Science 2024-05-30 Mathieu Carriere , Marc Theveneau , Théo Lacombe

Latency is a major concern for web rendering engines like those in Chrome, Safari, and Firefox. These engines reduce latency by using an incremental layout algorithm to redraw the page when the user interacts with it. In such an algorithm,…

Programming Languages · Computer Science 2025-09-29 Marisa Kirisame , Tiezhi Wang , Pavel Panchekha

Recent years have witnessed a fast growth in mathematical artificial intelligence (AI). One of the most successful mathematical AI approaches is topological data analysis (TDA) via persistent homology (PH) that provides explainable AI (xAI)…

General Topology · Mathematics 2025-10-27 Yiming Ren , Guowei Wei

Temporal graph classification plays a critical role in applications such as cybersecurity, brain connectivity analysis, social dynamics, and traffic monitoring. Despite its significance, this problem remains underexplored compared to…

Machine Learning · Computer Science 2025-11-26 Md. Joshem Uddin , Soham Changani , Baris Coskunuzer

We present a holistic, topology-based visualization technique for spatial time series data based on an adaptation of Fuzzy Contour Trees. Common analysis approaches for time dependent scalar fields identify and track specific features. To…

Human-Computer Interaction · Computer Science 2021-07-28 Anna-Pia Lohfink , Frederike Gartzky , Florian Wetzels , Luisa Vollmer , Christoph Garth

The family of visibility algorithms were recently introduced as mappings between time series and graphs. Here we extend this method to characterize spatially extended data structures by mapping scalar fields of arbitrary dimension into…

Data Analysis, Statistics and Probability · Physics 2017-09-13 Lucas Lacasa , Jacopo Iacovacci

Large time-varying graphs are increasingly common in financial, social and biological settings. Feature extraction that efficiently encodes the complex structure of sparse, multi-layered, dynamic graphs presents computational and…

Machine Learning · Computer Science 2023-05-12 Umar Islambekov , Hasani Pathirana , Omid Khormali , Cuneyt Akcora , Ekaterina Smirnova

Today, very large amounts of data are produced and stored in all branches of society including science. Mining these data meaningfully has become a considerable challenge and is of the broadest possible interest. The size, both in numbers…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-11 Andreas Vitalis

Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…

Machine Learning · Statistics 2023-08-23 Xingyue Pu , Tianyue Cao , Xiaoyun Zhang , Xiaowen Dong , Siheng Chen

We introduce a class of unconditionally energy stable, high order accurate schemes for gradient flows in a very general setting. The new schemes are a high order analogue of the minimizing movements approach for generating a time discrete…

Numerical Analysis · Mathematics 2020-02-11 Alexander Zaitzeff , Selim Esedoglu , Krishna Garikipati

Skeletonization extracts thin representations from images that compactly encode their geometry and topology. These representations have become an important topological prior for preserving connectivity in curvilinear structures, aiding…

Image and Video Processing · Electrical Eng. & Systems 2025-03-11 Luis D. Reyes Vargas , Martin J. Menten , Johannes C. Paetzold , Nassir Navab , Mohammad Farid Azampour

We introduce a notion for hierarchical graph clustering which we call the expander hierarchy and show a fully dynamic algorithm for maintaining such a hierarchy on a graph with $n$ vertices undergoing edge insertions and deletions using…

Data Structures and Algorithms · Computer Science 2020-07-22 Gramoz Goranci , Harald Räcke , Thatchaphol Saranurak , Zihan Tan

We propose a flexible and multi-scale method for organizing, visualizing, and understanding datasets sampled from or near stratified spaces. The first part of the algorithm produces a cover tree using adaptive thresholds based on a…

Computational Geometry · Computer Science 2016-03-01 Paul Bendich , Ellen Gasparovic , Christopher J. Tralie , John Harer

This paper introduces a novel approach that combines unsupervised active contour models with deep learning for robust and adaptive image segmentation. Indeed, traditional active contours, provide a flexible framework for contour evolution…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Antoine Habis , Vannary Meas-Yedid , Elsa Angelini , Jean-Christophe Olivo-Marin

Conventional algorithms in autonomous exploration face challenges due to their inability to accurately and efficiently identify the spatial distribution of convex regions in the real-time map. These methods often prioritize navigation…

Robotics · Computer Science 2025-03-18 Qiming Wang , Yulong Gao , Yang Wang , Xiongwei Zhao , Yijiao Sun , Xiangyan Kong

We propose a method for non-projective dependency parsing by incrementally predicting a set of edges. Since the edges do not have a pre-specified order, we propose a set-based learning method. Our method blends graph, transition, and…

Machine Learning · Computer Science 2019-10-25 Sean Welleck , Kyunghyun Cho