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We present a pipeline for characterizing and constraining initial conditions in cosmology via persistent homology. The cosmological observable of interest is the cosmic web of large scale structure, and the initial conditions in question…

Cosmology and Nongalactic Astrophysics · Physics 2020-12-08 Alex Cole , Matteo Biagetti , Gary Shiu

Peak counts have been shown to be an excellent tool to extract the non-Gaussian part of the weak lensing signal. Recently, we developped a fast stochastic forward model to predict weak-lensing peak counts. Our model is able to reconstruct…

Cosmology and Nongalactic Astrophysics · Physics 2015-11-16 Chieh-An Lin , Martin Kilbinger

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

The integrated shear 3-point correlation function $\zeta_{\pm}$ measures the correlation between the local shear 2-point function $\xi_{\pm}$ and the 1-point shear aperture mass in patches of the sky. Unlike other higher-order statistics,…

Cosmology and Nongalactic Astrophysics · Physics 2023-07-17 Zhengyangguang Gong , Anik Halder , Alexandre Barreira , Stella Seitz , Oliver Friedrich

For nearly three decades, spatial games have produced a wealth of insights to the study of behavior and its relation to population structure. However, as different rules and factors are added or altered, the dynamics of spatial models often…

Computer Science and Game Theory · Computer Science 2021-09-30 Jakob Stenseke

Weak gravitational lensing surveys are rapidly becoming important tools to probe directly the mass density fluctuations in the universe and its background dynamics. Earlier studies have shown that it is possible to model the statistics of…

Astrophysics · Physics 2009-11-07 Patrick Valageas , Andrew J. Barber , Dipak Munshi

Cosmic shear is one of the most powerful probes of Dark Energy, targeted by several current and future galaxy surveys. Lensing shear, however, is only sampled at the positions of galaxies with measured shapes in the catalog, making its…

Cosmology and Nongalactic Astrophysics · Physics 2021-03-31 Andrina Nicola , Carlos García-García , David Alonso , Jo Dunkley , Pedro G. Ferreira , Anže Slosar , David N. Spergel

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

Persistent homology is a technique recently developed in algebraic and computational topology well-suited to analysing structure in complex, high-dimensional data. In this paper, we exposit the theory of persistent homology from first…

Applications · Statistics 2016-11-30 Matthew Pietrosanu

Persistent homology, a method from topological data analysis, extracts robust, multi-scale features from data. It produces stable representations of time series by applying varying thresholds to their values (a process known as a…

Computation and Language · Computer Science 2026-04-24 Marius Huber , David R. Reich , Lena A. Jäger

Persistent homology is a tool that can be employed to summarize the shape of data by quantifying homological features. When the data is an object in $\mathbb{R}^d$, the (augmented) persistent homology transform ((A)PHT) is a family of…

Computational Geometry · Computer Science 2022-12-27 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

We introduce a new descriptor of the weblike pattern in the distribution of galaxies and matter: the scale dependent Betti numbers which formalize the topological information content of the cosmic mass distribution. While the Betti numbers…

We present a cosmic shear analysis of the 100 square degree weak lensing survey, combining data from the CFHTLS-Wide, RCS, VIRMOS-DESCART and GaBoDS surveys. Spanning ~100 square degrees, with a median source redshift z~0.78, this combined…

Persistent homology is an effective method for extracting topological information, represented as persistent diagrams, of spatial structure data. Hence it is well-suited for the study of protein structures. Attempts to incorporate…

Machine Learning · Computer Science 2024-08-01 An Wu , Yu Pan , Fuqi Zhou , Jinghui Yan , Chuanlu Liu

Persistent homology has emerged as a popular technique for the topological simplification of big data, including biomolecular data. Multidimensional persistence bears considerable promise to bridge the gap between geometry and topology.…

Biomolecules · Quantitative Biology 2014-12-25 Kelin Xia , Guo-Wei Wei

Since the Universe is inhomogeneous on scales well below the Hubble radius, light bundles from distant galaxies are deflected and distorted by the tidal gravitational field of the large-scale matter distribution as they propagate through…

Persistent homology is an area within topological data analysis (TDA) that can uncover different dimensional holes (connected components, loops, voids, etc.) in data. The holes are characterized, in part, by how long they persist across…

Methodology · Statistics 2025-04-08 Sixtus Dakurah , Jessi Cisewski-Kehe

Latent space matching, which consists of matching distributions of features in latent space, is a crucial component for tasks such as adversarial attacks and defenses, domain adaptation, and generative modelling. Metrics for probability…

Machine Learning · Computer Science 2025-03-05 Hiu-Tung Wong , Darrick Lee , Hong Yan
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