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We study network properties of networks evolving in time based on optimal transport principles. These evolve from a structure covering uniformly a continuous space towards an optimal design in terms of optimal transport theory. At…

Physics and Society · Physics 2023-10-25 Diego Baptista , Caterina De Bacco

Many biological systems approach physical limits to their performance, motivating the idea that their behavior and underlying mechanisms could be determined by such optimality. Nevertheless, optimization as a predictive principle has only…

Biological Physics · Physics 2023-12-05 Thomas R Sokolowski , Thomas Gregor , William Bialek , Gašper Tkačik

Systems of networked mobile robots, such as unmanned aerial or ground vehicles, will play important roles in future military and commercial applications. The communications for such systems will typically be over wireless links and may…

Networking and Internet Architecture · Computer Science 2011-09-01 Leenhapat Navaravong , John M. Shea , Eduardo L. Pasiliao , Gregory L. Barnette , Warren E. Dixon

Intracellular transport is essential for maintaining proper cellular function in most eukaryotic cells, with perturbations in active transport resulting in several types of disease. Efficient delivery of critical cargos to specific…

Biological Physics · Physics 2016-08-16 David Ando , Nickolay Korabel , Kerwyn Casey Huang , Ajay Gopinathan

This work clarifies the relation between network circuit (topology) and behavior (information transmission and synchronization) in active networks, e.g. neural networks. As an application, we show how to determine a network topology that is…

Chaotic Dynamics · Physics 2015-05-13 M. S. Baptista , J. X. de Carvalho , M. S. Hussein

A common feature of biological networks is the geometric property of self-similarity. Molecular regulatory networks through to circulatory systems, nervous systems, social systems and ecological trophic networks, show self-similar…

Molecular Networks · Quantitative Biology 2012-03-09 Simon DeDeo , David C. Krakauer

We study in this paper optimal mass transport over a strongly connected, directed graph on a given discrete time interval. Differently from previous literature, we do not assume full knowledge of the initial and final goods distribution…

Probability · Mathematics 2024-07-16 Aayan Masood Pathan , Michele Pavon

The structure of networks that provide optimal transport properties has been investigated in a variety of contexts. While many different formulations of this problem have been considered, it is recurrently found that optimal networks are…

Biological Physics · Physics 2015-05-13 Francis Corson

Nature is rife with networks that are functionally optimized to propagate inputs in order to perform specific tasks. Whether via genetic evolution or dynamic adaptation, many networks create functionality by locally tuning interactions…

Soft Condensed Matter · Physics 2019-02-14 Jason W. Rocks , Henrik Ronellenfitsch , Andrea J. Liu , Sidney R. Nagel , Eleni Katifori

Transport is an important function in many network systems and understanding its behavior on biological, social, and technological networks is crucial for a wide range of applications. However, it is a property that is not well-understood…

Disordered Systems and Neural Networks · Physics 2009-11-13 Lazaros K. Gallos , Chaoming Song , Shlomo Havlin , Hernan A. Makse

We analyze the structure of networks minimizing the global resistance to flow (or dissipated energy) with respect to two different constraints: fixed total channel volume and fixed total channel surface area. First, we determine the shape…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Marc Durand

Optimizing paths on networks is crucial for many applications, from subway traffic to Internet communication. As global path optimization that takes account of all path-choices simultaneously is computationally hard, most existing routing…

Physics and Society · Physics 2013-09-05 Chi Ho Yeung , David Saad , K. Y. Michael Wong

Optimal transport is a framework that facilitates the most efficient allocation of a limited amount of resources. However, the most efficient allocation scheme does not necessarily preserve the most fairness. In this paper, we establish a…

Optimization and Control · Mathematics 2021-04-01 Jason Hughes , Juntao Chen

Congestion in transport networks is a topic of theoretical interest and practical importance. In this paper we study the flow of vehicles in urban street networks. In particular, we use a cellular automata model to simulate the motion of…

Physics and Society · Physics 2010-12-16 Salvatore Scellato , Luigi Fortuna , Mattia Frasca , Jesús Gómez-Gardeñes , Vito Latora

Understanding the dependence and interplay between architecture and function in biological networks has great relevance to disease progression, biological fabrication and biological systems in general. We propose methods to assess the…

Quantitative Methods · Quantitative Biology 2009-10-17 Soumen Roy , Vladimir Filkov

Global infrastructure robustness and local transport efficiency are critical requirements for transportation networks. However, since passengers often travel greedily to maximize their own benefit and trigger traffic jams, overall…

Adaptation and Self-Organizing Systems · Physics 2024-01-09 Alessandro Lonardi , Caterina De Bacco

In this paper, we study information transport in multiplex networks comprised of two coupled subnetworks. The upper subnetwork, called the logical layer, employs the shortest paths protocol to determine the logical paths for packets…

Physics and Society · Physics 2016-02-17 Cunlai Pu , Siyuan Li , Xianxia Yang , Jian Yang

Maximum entropy modeling is a flexible and popular framework for formulating statistical models given partial knowledge. In this paper, rather than the traditional method of optimizing over the continuous density directly, we learn a smooth…

Methodology · Statistics 2017-05-01 Gabriel Loaiza-Ganem , Yuanjun Gao , John P. Cunningham

Large-scale structural patterns commonly occur in network models of complex systems including a skewed node degree distribution and small-world topology. These patterns suggest common organizational constraints and similar functional…

Populations and Evolution · Quantitative Biology 2011-04-04 Stuart R. Borrett , Brian D. Fath , Bernard C. Patten

It is shown that optimal network plans can be obtained, naturally, as a limit of easier problems of point allocations. These problems are obtained by minimizing the mass transportation on the set of atomic measures of prescribed number of…

Optimization and Control · Mathematics 2009-10-15 Gershon Wolansky