Related papers: A note on watchman's walks in de Bruijn graphs
In a graph, a watchman's walk is a minimum closed dominating walk. Given a graph $G$ and a single watchman, the length of a watchman's walk in $G$ (the watchman number) is denoted by $w(G)$ and the typical goals of the watchman's walk…
This paper presents a method to find new De Bruijn cycles based on ones of lesser order. This is done by mapping a De Bruijn cycle to several vertex disjoint cycles in a De Bruijn digraph of higher order and connecting these cycles into one…
Let be the following strategy to construct a walk in a labeled digraph: at each vertex, we follow the unvisited arc of minimum label. In this work we study for which languages, applying the previous strategy over the corresponding de Bruijn…
A de Bruijn sequence of order n over a k-symbol alphabet is a circular sequence where each length-n sequence occurs exactly once. We present a way of extending de Bruijn sequences by adding a new symbol to the alphabet: the extension is…
This paper introduces the de Bruijn graph edge minimization problem, which is related to the compression of de Bruijn graphs: find the order-k de Bruijn graph with minimum edge count among all orders. We describe an efficient algorithm that…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
Sequence assembly from short reads is an important problem in biology. It is known that solving the sequence assembly problem exactly on a bi-directed de Bruijn graph or a string graph is intractable. However finding a Shortest Double…
We develop a new approach to random walks on de Bruijn graphs over the alphabet $A$ through right congruences on $A^k$, defined using the natural right action of $A^+$. A major role is played by special right congruences, which correspond…
We initiate the study of computational problems on $k$-mers (strings of length $k$) in labeled graphs. As a starting point, we consider the problem of counting the number of distinct $k$-mers found on the walks of a graph. We establish that…
This note deals with the relationship between the total number of $k$-walks in a graph, and the sum of the $k$-th powers of its vertex degrees. In particular, it is shown that the the number of all $k$-walks is upper bounded by the sum of…
The graph of overlapping permutations is a directed graph that is an analogue to the De Bruijn graph. It consists of vertices that are permutations of length $n$ and edges that are permutations of length $n+1$ in which an edge $a_1\cdots…
This paper considers the Hamiltonian walk problem in the multi-agent coordination framework, referred to as $k$-agents Hamiltonian walk problem ($k$-HWP). In this problem, a set of $k$ connected agents collectively compute a spanning walk…
A walk of length $n$ in a graph is consistent if there exists an automorphism of the graph that maps the initial $n-1$ vertices to the final $n-1$ vertices of the walk. In this paper we find some sufficient conditions for a consistent walk…
We count the number of walks of length n on a k-node circular digraph that cover all k nodes in two ways. The first way illustrates the transfer-matrix method. The second involves counting various classes of height-restricted lattice paths.…
A generalized de Bruijn digraph generalizes a de Bruijn digraph to the case where the number of vertices need not be a pure power of an integer. Hamiltonian cycles in these digraphs thus generalize regular de~Bruijn cycles, and we will thus…
This paper analyzes the meeting time between a pair of pursuer and evader performing random walks on digraphs. The existing bounds on the meeting time usually work only for certain classes of walks and cannot be used to formulate…
We consider the watchman route problem for a $k$-transmitter watchman: standing at point $p$ in a polygon $P$, the watchman can see $q\in P$ if $\overline{pq}$ intersects $P$'s boundary at most $k$ times -- $q$ is $k$-visible to $p$.…
We approach the problem of counting the number of walks in a digraph from three different perspectives: enumerative combinatorics, linear algebra, and symbolic dynamics.
Understanding how the cycles of a graph or digraph behave in general has always been an important point of graph theory. In this paper, we study the question of finding a set of $k$ vertex-disjoint cycles (resp. directed cycles) of distinct…
Dynamic graphs have emerged as an appropriate model to capture the changing nature of many modern networks, such as peer-to-peer overlays and mobile ad hoc networks. Most of the recent research on dynamic networks has only addressed the…