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In biology, a phylogenetic tree is a tool to represent the evolutionary relationship between species. Unfortunately, the classical Schr\"oder tree model is not adapted to take into account the chronology between the branching nodes. In…

Data Structures and Algorithms · Computer Science 2019-01-15 Olivier Bodini , Antoine Genitrini , Mehdi Naima

Canonical distances such as Euclidean distance often fail to capture the appropriate relationships between items, subsequently leading to subpar inference and prediction. Many algorithms have been proposed for automated learning of suitable…

Machine Learning · Statistics 2020-08-24 Tyler M. Tomita , Joshua T. Vogelstein

We apply a tree-based methodology to solve new, very broadly defined families of nested recursions of the general form R(n)=sum_{i=1}^k R(n-a_i-sum_{j=1}^p R(n-b_{ij})), where a_i are integers, b_{ij} are natural numbers, and k,p are…

Combinatorics · Mathematics 2018-08-09 Abraham Isgur , Vitaly Kuznetsov , Mustazee Rahman , Stephen Tanny

In this paper, we study pattern avoidance in weak ascent sequences, giving some results for patterns of length 3. This is an analogous study to one given by Duncan and Steingr\'imsson (2011) for ascent sequences. More precisely, we provide…

Combinatorics · Mathematics 2024-09-04 Beáta Bényi , Toufik Mansour , José L. Ramírez

We consider general classes of lattice clusters, including various kinds of animals and trees on different lattices. We prove that if a given local configuration ("pattern") of sites and bonds can occur in large clusters, then it occurs at…

Probability · Mathematics 2009-09-25 Neal Madras

Babson and Steingr\'{\i}msson introduced generalized permutation patterns that allow the requirement that two adjacent letters in a pattern must be adjacent in the permutation. We consider n-permutations that avoid the generalized pattern…

Combinatorics · Mathematics 2007-05-23 Sergey Kitaev

A set family ${\cal F}$ is $uncrossable$ if $A \cap B,A \cup B \in {\cal F}$ or $A \setminus B,B \setminus A \in {\cal F}$ for any $A,B \in {\cal F}$. A classic result of Williamson, Goemans, Mihail, and Vazirani [STOC 1993:708-717] states…

Data Structures and Algorithms · Computer Science 2023-07-21 Zeev Nutov

We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that…

Combinatorics · Mathematics 2012-01-13 Edinah K. Gnang , Chetan Tonde

Inspired by the results of Baik, Deift and Johansson on the limiting distribution of the lengths of the longest increasing subsequences in random permutations, we find those limiting distributions for pattern-restricted permutations in…

Combinatorics · Mathematics 2009-09-29 Emeric Deutsch , A. J. Hildebrand , Herbert S. Wilf

This paper considers the enumeration of ternary trees (i.e. rooted ordered trees in which each vertex has 0 or 3 children) avoiding a contiguous ternary tree pattern. We begin by finding recurrence relations for several simple tree…

Combinatorics · Mathematics 2011-12-30 Nathan Gabriel , Katherine Peske , Lara Pudwell , Samuel Tay

We show how the categorical logic of untyped, simply typed and dependently typed lambda calculus can be structured around the notion of category with family (cwf). To this end we introduce subcategories of simply typed cwfs (scwfs), where…

Logic in Computer Science · Computer Science 2020-07-08 Simon Castellan , Pierre Clairambault , Peter Dybjer

We extend the notion of an enumeration scheme developed by Zeilberger and Vatter to the case of vincular patterns (also called "generalized patterns" or "dashed patterns"). In particular we provide an algorithm which takes in as input a set…

Combinatorics · Mathematics 2012-01-17 Andrew M. Baxter , Lara K. Pudwell

Clustering is a fundamental approach to understanding data patterns, wherein the intuitive Euclidean distance space is commonly adopted. However, this is not the case for implicit cluster distributions reflected by qualitative attribute…

Machine Learning · Statistics 2026-03-05 Mingjie Zhao , Sen Feng , Yiqun Zhang , Mengke Li , Yang Lu , Yiu-ming Cheung

The present article is a review of recent developments concerning the notion of F{\o}lner sequences both in operator theory and operator algebras. We also give a new direct proof that any essentially normal operator has an increasing…

Operator Algebras · Mathematics 2013-04-12 Pere Ara , Fernando Lledó , Dmitry V. Yakubovich

We exploit Krattenthaler's bijection between the set $S_n(3\textrm{-}1\textrm{-}2)$ of permutations in $S_n$ avoiding the classical pattern $3\textrm{-}1\textrm{-}2$ and Dyck $n$-paths to study the distribution of every consecutive pattern…

Combinatorics · Mathematics 2009-04-02 M. Barnabei , F. Bonetti , M. Silimbani

Tuffley and Steel (1997) proved that Maximum Likelihood and Maximum Parsimony methods in phylogenetics are equivalent for sequences of characters under a simple symmetric model of substitution with no common mechanism. This result has been…

Populations and Evolution · Quantitative Biology 2009-07-06 Mareike Fischer , Bhalchandra D. Thatte

We construct a new bijection between the set of $n\times k$ $0$-$1$ matrices with no three $1$'s forming a $\Gamma$ configuration and the set of $(n,k)$-Callan sequences, a simple structure counted by poly-Bernoulli numbers. We give two…

Combinatorics · Mathematics 2019-11-28 Beáta Bényi , Gábor V. Nagy

The number of inversion sequences avoiding two patterns $101$ and $102$ is known to be the same as the number of permutations avoiding three patterns $2341$, $2431$, and $3241$. This sequence also counts the number of Schr\"{o}der paths…

Combinatorics · Mathematics 2024-04-08 JiSun Huh , Sangwook Kim , Seunghyun Seo , Heesung Shin

We prove several results showing that every locally finite Borel graph whose large-scale geometry is "tree-like" induces a treeable equivalence relation. In particular, our hypotheses hold if each component of the original graph either has…

Logic · Mathematics 2025-04-02 Ruiyuan Chen , Antoine Poulin , Ran Tao , Anush Tserunyan

We consider algorithms and lower bounds for various problems over forest languages; as input models we allow forest algebras, deterministic forest automata and nondeterministic forest automata. For the equivalence problem, we give an…

Formal Languages and Automata Theory · Computer Science 2021-06-07 Marcial Gaißert , Manfred Kufleitner
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