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DNA is an attractive medium for digital data storage. When data is stored on DNA, errors occur, which makes error-correcting coding techniques critical for reliable DNA data storage. To reduce the errors, a common technique is to include…

Information Theory · Computer Science 2024-06-27 Franziska Weindel , Andreas L. Gimpel , Robert N. Grass , Reinhard Heckel

The two strands of a DNA molecule with a repetitive sequence can pair into many different basepairing patterns. For perfectly periodic sequences, early bulk experiments of Poerschke indicate the existence of a sliding process, permitting…

Biomolecules · Quantitative Biology 2007-05-23 Richard A. Neher , Ulrich Gerland

We construct the Einstein-axions AdS black hole from Born-Infeld electrodynamics. Various DC transport coefficients of the dual boundary theory are computed. The DC electric conductivity depends on the temperature, which is a novel property…

High Energy Physics - Theory · Physics 2018-06-19 Xiao-Mei Kuang , Jian-Pin Wu , Zhenhua Zhou

The mechanical model based on beads and springs, which we recently proposed to study non-specific DNA-protein interactions [J. Chem. Phys. 130, 015103 (2009)], was improved by describing proteins as sets of interconnected beads instead of…

Biological Physics · Physics 2009-10-29 Ana-Maria Florescu , Marc Joyeux

Transport through semiconductor nanostructures is a quantum-coherent process. This paper focuses on systems in which the electron's dynamics is ballistic and the transport is dominated by the scattering from structure boundaries. Opposite…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 E. R. Racec , P. N. Racec , U. Wulf

We study transport properties of a disordered tight-binding model (XX spin chain) in the presence of dephasing. Focusing on diffusive behavior in the thermodynamic limit at high energies, we analytically derive the dependence of…

Strongly Correlated Electrons · Physics 2013-03-05 Marko Znidaric , Martin Horvat

The elasticity of DNA catenanes, i.e. multiply linked DNA rings, is investigated using the Gauss invariant as a minimal model for topology conservation. An effective elastic free energy as a function of the distance $R$ between segments…

Soft Condensed Matter · Physics 2007-05-23 M. Otto , T. A. Vilgis

The experiment that the high spin selectivity and the length-dependent spin polarization are observed in double-stranded DNA [Science ${\bf 331}$, 894 (2011)], is elucidated by considering the combination of the spin-orbit coupling, the…

Mesoscale and Nanoscale Physics · Physics 2015-06-03 Ai-Min Guo , Qing-feng Sun

This paper investigates covert multi-hop communication in wireless networks where an adversary employs a cyclostationary (cycle) detector to reveal hidden transmissions. The covert route employs direct sequence spread spectrum (DSSS)…

Signal Processing · Electrical Eng. & Systems 2026-05-26 Swapnil Saha , Rahul Aggarwal , Fikadu Dagefu , Justin Kong , Jihun Choi , Brian Kim , Predrag Spasojevic

We investigate the computing power of a restricted class of DNA strand displacement structures: those that are made of double strands with nicks (interruptions) in the top strand. To preserve this structural invariant, we impose…

Logic in Computer Science · Computer Science 2010-06-16 Luca Cardelli

Although carbon nanotubes are potential candidates for DNA encapsulation and subsequent delivery of biological payloads to living cells, the thermodynamical spontaneity of DNA encapsulation under physiological conditions is still a matter…

Biological Physics · Physics 2016-05-05 Fernando J. A. L. Cruz , Juan J. de Pablo , José P. B. Mota

We show that the conductivity of a two-dimensional electron gas can be intrinsically anisotropic despite isotropic Fermi surface, energy dispersion, and disorder configuration. In the model we study, the anisotropy stems from the interplay…

Mesoscale and Nanoscale Physics · Physics 2019-07-24 Maxim Trushin , Antonio H. Castro Neto , Giovanni Vignale , Dimitrie Culcer

We investigate charge transport in pentacene-graphene nanojunctions employing density functional theory (DFT) electronic structure calculations and the Landauer transport formalism. The results show that the unique electronic properties of…

Mesoscale and Nanoscale Physics · Physics 2013-02-26 Ivan A. Pshenichnyuk , Pedro B. Coto , Susanne Leitherer , Michael Thoss

Charge inversion of a DNA double helix by an oppositely charged flexible polyelectrolyte (PE) is widely used for gene delivery. It is considered here in terms of discrete charges of DNA. We concentrate on the worst scenario case when in the…

Soft Condensed Matter · Physics 2009-11-07 T. T. Nguyen , B. I. Shklovskii

The advances in the growth techniques provide numerous scope to explore the possibilities of new 2D materials for potential applications. With the aid of first-principle calculations we show that 2D Na can be a new addition to the family of…

Materials Science · Physics 2019-08-08 Ajit Jena , Wu Li

The in vivo free energy of looping double-stranded DNA by the lac repressor has a remarkable behavior whose origins are not fully understood. In addition to the intrinsic periodicity of the DNA double helix, the in vivo free energy has an…

Biomolecules · Quantitative Biology 2007-05-23 Leonor Saiz , Jose M. G. Vilar

Numerical calculations of anisotropic hopping transport based on the resistor network model are presented. Conductivity is shown to follow the stretched exponential dependence on temperature with exponents changing from 1/4 to 1 as the wave…

Mesoscale and Nanoscale Physics · Physics 2016-11-09 S. Ihnatsenka

DNA denaturation has long been a subject of intense study due to its relationship to DNA transcription and its fundamental importance as a nonlinear, structural transition. Many aspects of this phenomenon, however, remain poorly understood.…

Mesoscale and Nanoscale Physics · Physics 2011-06-16 Kirill A. Velizhanin , Chih-Chun Chien , Yonatan Dubi , Michael Zwolak

Nucleic acids have been regarded as stiff polymers with long-range flexibility and generally modeled using elastic rod models of polymer physics. Notwithstanding, investigations carried out over the past few years on single fragments of…

Soft Condensed Matter · Physics 2025-05-09 Marco Zoli

Switches-based hybrid architecture has attracted much attention, especially in directional-of-arrival (DOA) sensing, due to its ability of significantly reducing the hardware cost by compressing massive multiple-input multiple-output (MIMO)…

Signal Processing · Electrical Eng. & Systems 2025-01-14 Yifan Li , Kang Wei , Linqiong Jia , Jun Zou , Feng Shu , Yaoliang Song , Jiangzhou Wang
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