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Large Language Models (LLMs) have significantly transformed our daily life and established a new paradigm in natural language processing (NLP). However, the predominant pretraining of LLMs on extensive web-based texts remains insufficient…

Chemical Physics · Physics 2024-12-31 Yang Han , Ziping Wan , Lu Chen , Kai Yu , Xin Chen

Chemists now routinely use software as part of their work. For example, virtual chemistry allows chemical reactions to be simulated. In particular, a selection of software is available for the visualisation of complex 3-dimensional…

Graphics · Computer Science 2013-07-25 Karl Harrison , Jonathan P. Bowen , Alice M. Bowen

We have studied gas-grain chemical models of interstellar clouds to search for nonlinear dynamical evolution. A prescription is given for producing oscillatory solutions when a bistable solution exists in the gas-phase chemistry and we…

Astrophysics of Galaxies · Physics 2023-05-01 Gwenaëlle Dufour , Steven B. Charnley , Johan E. Lindberg

Astronomy and cosmology have embraced the internet. We routinely and successfully use the internet as a repository for sharing code, publications and information, and as a computational resource. However the interactive nature of the web,…

Instrumentation and Methods for Astrophysics · Physics 2009-01-22 Thomas Kitching , Adam Amara , Anais Rassat , Alexandre Refregier

Context. An increasing number of high-resolution stellar spectra is available today thanks to many past and ongoing extensive spectroscopic surveys. Consequently, the scientific community needs automatic procedures to derive atmospheric…

Instrumentation and Methods for Astrophysics · Physics 2014-10-01 S. Blanco-Cuaresma , C. Soubiran , U. Heiter , P. Jofré

The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

Deep learning, a subfield of machine learning, has gained importance in various application areas in recent years. Its growing popularity has led it to enter the natural sciences as well. This has created the need for molecular…

Chemical Physics · Physics 2026-03-09 Sanjanasri JP , Pratiti Bhadra , N. Sukumar , Soman KP

Computational approaches to exploring "chemical universes", i.e., very large sets, potentially infinite sets of compounds that can be constructed by a prescribed collection of reaction mechanisms, in practice suffer from a combinatorial…

Formal Languages and Automata Theory · Computer Science 2014-04-16 Jakob L. Andersen , Christoph Flamm , Daniel Merkle , Peter F. Stadler

Dust grains play a central role in the physics and chemistry of cosmic environments. They influence the optical and thermal properties of the medium due to their interaction with stellar radiation; provide surfaces for the chemical…

Astrophysics of Galaxies · Physics 2021-05-05 Alexey Potapov , Martin McCoustra

Background In analytical chemistry, spatial information about materials is commonly captured through imaging techniques, such as traditional color cameras or with advanced hyperspectral cameras and microscopes. However, efficiently…

Computer Vision and Pattern Recognition · Computer Science 2025-11-07 Puneet Mishra , Martijntje Vollebregt , Yizhou Ma , Maria Font-i-Furnols

Predictions of astrochemical models depend strongly on the reaction rate coefficients used in the simulations. We reviewed a number of key reactions for the chemistry of nitrogen-bearing species in the dense interstellar medium and proposed…

Astrophysics of Galaxies · Physics 2013-10-17 V. Wakelam , I. W. M. Smith , J. -C. Loison , D. Talbi , S. J. Klippenstein , A. Bergeat , W. D. Geppert , K. M. Hickson

We present a modified TREESPH code to model galaxies in 3d. The model includes a multi-phase description of the interstellar medium which combines two numerical techniques. A diffuse warm/hot gas phase is modelled by SPH while a sticky…

Astrophysics · Physics 2009-11-10 S. Harfst , C. Theis , G. Hensler

Over the past decade, the Python-based Simulations of Chemistry Framework (PySCF) has developed into a widely used open-source platform for electronic structure theory and quantum chemical method development. This article reviews the major…

Chemical Physics · Physics 2026-04-09 Qiming Sun , Matthew R Hermes , Xiaojie Wu , Huanchen Zhai , Xing Zhang , Abdelrahman M. Ahmed , Juan José Aucar , Oliver J. Backhouse , Samragni Banerjee , Peng Bao , Nikolay A. Bogdanov , Kyle Bystrom , Frédéric Chapoton , Ning-Yuan Chen , Ivan Yu. Chernyshov , Helen S. Clifford , Sander Cohen-Janes , Zhi-Hao Cui , Yann D. Damour , Nike Dattani , Linus Bjarne Dittmer , Sebastian Ehlert , Janus Juul Eriksen , Francesco A. Evangelista , Simon A. Ewing , Ardavan Farahvash , Kevin Focke , Yang Gao , Kevin E. Gasperich , Nathan Gillispie , Jonas Greiner , Matthew R. Hennefarth , Jan Hermann , Christopher Hillenbrand , Joonatan Huhtasalo , Basil Ibrahim , Bhavnesh Jangid , Alireza Nejati Javaremi , Andrew J. Jenkins , Yu Jin , Daniel S. King , Derk Pieter Kooi , Jo S. Kurian , Henrik R. Larsson , Bryan Tak Gwong Lau , Seunghoon Lee , Susi Lehtola , Chenghan Li , Hao Li , Jiachen Li , Rui Li , Shuhang Li , Aleksandr O. Lykhin , Ankit Mahajan , Nastasia Mauger , Pablo del Mazo-Sevillano , Jonathan Moussa , Kousuke Nakano , Verena A. Neufeld , Linqing Peng , Hung Q. Pham , Peter Pinski , Pavel Pokhilko , Zhichen Pu , Yubing Qian , Stephen Jon Quiton , Wanja T. Schulze , Thais R. Scott , Aniruddha Seal , James D. Serna , James E. T. Smith , Kori E. Smyser , Terrence Stahl , Chong Sun , Kevin J. Sung , Egor Trushin , Shiv Upadhyay , Ethan A. Vo , Thijs Vogels , Shirong Wang , Tai Wang , Xiao Wang , Xubo Wang , Yuanheng Wang , Mark Williamson , Junjie Yang , Hong-Zhou Ye , Chia-Nan Yeh , Haiyang Yu , Jincheng Yu , Victor Wen-zhe Yu , Chaoqun Zhang , Dayou Zhang , Yichi Zhang , Zijun Zhao , Zehao Zhou , Andrew J. Zhu , Tianyu Zhu , Timothy C. Berkelbach , Laura Gagliardi , Sandeep Sharma , Alexander Sokolov , Garnet Kin-Lic Chan

Text-based representations of chemicals and proteins can be thought of as unstructured languages codified by humans to describe domain-specific knowledge. Advances in natural language processing (NLP) methodologies in the processing of…

Biomolecules · Quantitative Biology 2020-02-17 Hakime Öztürk , Arzucan Özgür , Philippe Schwaller , Teodoro Laino , Elif Ozkirimli

Interstellar space is filled with a dilute mixture of charged particles, atoms, molecules and dust grains, called the interstellar medium (ISM). Understanding its physical properties and dynamical behavior is of pivotal importance to many…

Astrophysics of Galaxies · Physics 2014-12-18 Ralf S. Klessen , Simon C. O. Glover

In this review I give a summary of the state-of-the-art for what concerns the chemo-dynamical numerical modelling of galaxies in general and of dwarf galaxies in particular. In particular, I focus my attention on (i) initial conditions;…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-17 S. Recchi

Interstellar molecules, which play an important role in astrochemistry, are identified using observed spectral lines. Despite the advent of spectral analysis tools in the past decade, the identification of spectral lines remains a tedious…

Astrophysics of Galaxies · Physics 2025-02-07 Yisheng Qiu , Tianwei Zhang , Thomas Möller , XueJian Jiang , Zihao Song , Huaxi Chen , Donghui Quan

Determining the atomic and molecular content of the interstellar medium (ISM) as a function of environmental parameters is of fundamental importance to understand the star-formation process across the epochs. Although there exist various…

Astrophysics of Galaxies · Physics 2022-12-07 Thomas G. Bisbas , Ewine F. van Dishoeck , Chia-Yu Hu , Andreas Schruba

Chemistry plays a crucial role in many domains, such as drug discovery and material science. While large language models (LLMs) such as GPT-4 exhibit remarkable capabilities on natural language processing tasks, existing research indicates…

Artificial Intelligence · Computer Science 2024-08-13 Botao Yu , Frazier N. Baker , Ziqi Chen , Xia Ning , Huan Sun