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The goal of these lectures is to review some mathematical aspects of random tree models used in evolutionary biology to model gene trees or species trees. We start with stochastic models of tree shapes (finite trees without edge lengths),…

Probability · Mathematics 2017-08-30 Amaury Lambert

We present $k^{O(k^2)} m$ time algorithms for various problems about decomposing a given undirected graph by edge cuts or vertex separators of size $<k$ into parts that are ``well-connected'' with respect to cuts or separators of size $<k$;…

Data Structures and Algorithms · Computer Science 2024-11-06 Tuukka Korhonen

In this article it is shown that the Brownian motion on the continuum random tree is the scaling limit of the simple random walks on any family of discrete $n$-vertex ordered graph trees whose search-depth functions converge to the Brownian…

Probability · Mathematics 2012-10-24 David Croydon

We study a random fragmentation process and its associated random tree. The process has earlier been studied by Dean and Majumdar (J. Phys. A: Math. Gen., vol. 35, L501--L507), who found a phase transition: the number of fragmentations is…

Probability · Mathematics 2007-05-23 S. Janson , R. Neininger

We introduce a random graph model based on k-trees, which can be generated by applying a probabilistic preferential attachment rule, but which also has a simple combinatorial description. We carry out a precise distributional analysis of…

Combinatorics · Mathematics 2010-03-02 Alois Panholzer , Georg Seitz

We study a natural fragmentation process of the so-called stable tree introduced by Duquesne and Le Gall, which consists in removing the nodes of the tree according to a certain procedure that makes the fragmentation self-similar with…

Probability · Mathematics 2007-05-23 Gregory Marc Miermont

Random planar maps are considered in the physics literature as the discrete counterpart of random surfaces. It is conjectured that properly rescaled random planar maps, when conditioned to have a large number of faces, should converge to a…

Probability · Mathematics 2009-09-29 Jean-François Marckert , Grégory Miermont

The branching-ruin number of a tree, which describes its asymptotic growth and geometry, can be seen as a polynomial version of the branching number. This quantity was defined by Collevecchio, Kious and Sidoravicius (2018) in order to…

Probability · Mathematics 2018-11-21 Andrea Collevecchio , Cong Bang Huynh , Daniel Kious

We introduce a $k$-leaf removal algorithm as a generalization of the so-called leaf removal algorithm. In this pruning algorithm, vertices of degree smaller than $k$, together with their first nearest neighbors and all incident edges are…

Disordered Systems and Neural Networks · Physics 2019-02-26 N. Azimi-Tafreshi , S. Osat , S. N. Dorogovtsev

We consider a natural analogue of Brownian motion on free orthogonal quantum groups and prove that it exhibits a cutoff at time $N\ln(N)$. Then, we study the induced classical process on the real line and compute its atoms and density. This…

Probability · Mathematics 2021-01-05 Amaury Freslon , Lucas Teyssier , Simeng Wang

Bootstrap percolation on an arbitrary graph has a random initial configuration, where each vertex is occupied with probability p, independently of each other, and a deterministic spreading rule with a fixed parameter k: if a vacant site has…

Probability · Mathematics 2008-04-26 Jozsef Balogh , Yuval Peres , Gabor Pete

Consider a point particle moving through a Poisson distributed array of cubes all oriented along the axes - the random wind-tree model introduced in Ehrenfest-Ehrenfest (1912). We show that, in the joint Boltzmann-Grad and diffusive limit…

Probability · Mathematics 2019-12-06 Christopher Lutsko , Bálint Tóth

In this paper we study the vertex cut-trees of Galton-Watson trees conditioned to have $n$ leaves. This notion is a slight variation of Dieuleveut's vertex cut-tree of Galton-Watson trees conditioned to have $n$ vertices. Our main result is…

Probability · Mathematics 2017-04-04 Hui He , Matthias Winkel

Given a Galton-Watson process conditioned to have total progeny equal to $n$, we study the asymptotic probability that this conditioned Galton-Watson process has distance to the border bigger or equal than $k$, as the number of nodes $n…

Probability · Mathematics 2025-03-05 Víctor J. Maciá

We study the behaviour of the rescaled minimal subtree containing the origin and K random vertices selected from a random critical (sufficiently spread-out, and in dimensions d > 8) lattice tree conditioned to survive until time ns, in the…

Probability · Mathematics 2025-03-30 Manuel Cabezas , Alexander Fribergh , Mark Holmes , Edwin Perkins

Motivated by a down-up Markov chain on cladograms, David Aldous conjectured in 1999 that there exists a "diffusion on continuum trees" whose mass partitions at any finite number of branch points evolve as Wright-Fisher diffusions with some…

Probability · Mathematics 2023-05-30 Noah Forman , Soumik Pal , Douglas Rizzolo , Matthias Winkel

The k-Terminal Cut problem, also known as the Multiway Cut problem, is defined on an edge-weighted graph with $k$ distinct vertices called "terminals." The goal is to remove a minimum weight collection of edges from the graph such that…

Data Structures and Algorithms · Computer Science 2019-10-03 Mark Velednitsky

Take a continuous-time Galton-Watson tree. If the system survives until a large time $T$, then choose $k$ particles uniformly from those alive. What does the ancestral tree drawn out by these $k$ particles look like? Some special cases are…

Probability · Mathematics 2019-02-14 Simon C. Harris , Samuel G. G. Johnston , Matthew I. Roberts

Aldous and Pitman (1994) studied asymptotic distributions, as n tends to infinity, of various functionals of a uniform random mapping of a set of n elements, by constructing a mapping-walk and showing these mapping-walks converge weakly to…

Probability · Mathematics 2007-05-23 David Aldous , Jim Pitman

Most computational models of dependency syntax consist of distributions over spanning trees. However, the majority of dependency treebanks require that every valid dependency tree has a single edge coming out of the ROOT node, a constraint…

Computation and Language · Computer Science 2022-11-29 Miloš Stanojević
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