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Recent work has shown that probabilistic models based on pairwise interactions-in the simplest case, the Ising model-provide surprisingly accurate descriptions of experiments on real biological networks ranging from neurons to genes.…

Quantitative Methods · Quantitative Biology 2007-12-18 Tamara Broderick , Miroslav Dudik , Gasper Tkacik , Robert E. Schapire , William Bialek

Humans and other organisms make decisions choosing between different options, with the aim to maximize the reward and minimize the cost. The main theoretical framework for modeling the decision-making process has been based on the highly…

Neurons and Cognition · Quantitative Biology 2024-11-19 Olga Tapinova , Tal Finkelman , Tamar Reitich-Stolero , Rony Paz , Assaf Tal , Nir S. Gov

Dynamical Ising machines are actively investigated from the perspective of finding efficient heuristics for NP-hard optimization problems. However, the existing data demonstrate super-polynomial scaling of the running time with the system…

Statistical Mechanics · Physics 2022-05-24 Mikhail Erementchouk , Aditya Shukla , Pinaki Mazumder

Mathematical models of spatial population dynamics typically focus on the interplay between dispersal events and birth/death processes. However, for many animal communities, significant arrangement in space can occur on shorter timescales,…

Populations and Evolution · Quantitative Biology 2019-06-06 Jonathan R. Potts , Mark A. Lewis

Using Monte Carlo simulations based on the Metropolis algorithm, we investigate the dynamic phase transition properties of kinetic Ising model driven by a sinusoidally oscillating magnetic field in the presence of additive white noise. We…

Statistical Mechanics · Physics 2018-07-10 Yusuf Yüksel

The past decade has seen the emergence of Ising machines targeting hard combinatorial optimization problems by minimizing the Ising Hamiltonian with spins represented by continuous dynamical variables. However, capabilities of these…

Emerging Technologies · Computer Science 2025-12-30 Aditya Shukla , Mikhail Erementchouk , Pinaki Mazumder

We study the dynamical percolation transition of the geometrical clusters in the two-dimensional Ising model when it is subjected to a pulsed field below the critical temperature. The critical exponents are independent of the temperature…

Statistical Mechanics · Physics 2011-04-20 Soumyajyoti Biswas , Anasuya Kundu , Anjan Kumar Chandra

We study opinion dynamics on networks with a nontrivial community structure, assuming individuals can update their binary opinion as the result of the interactions with an external influence with strength $h\in [0,1]$ and with other…

Probability · Mathematics 2023-06-14 Simone Baldassarri , Anna Gallo , Vanessa Jacquier , Alessandro Zocca

Nonreciprocal interactions in many-body systems lead to time-dependent states, commonly observed in biological, chemical, and ecological systems. The stability of these states in the thermodynamic limit and the critical behavior of the…

Statistical Mechanics · Physics 2025-04-01 Yael Avni , Michel Fruchart , David Martin , Daniel Seara , Vincenzo Vitelli

We briefly introduce hysteresis in spatially extended systems and the dynamic phase transition observed as the frequency of the oscillating field increases beyond a critical value. Hysteresis and the decay of metastable phases are closely…

Statistical Mechanics · Physics 2007-05-23 P. A. Rikvold , G. Korniss , C. J. White , M. A. Novotny , S. W. Sides

Among the properties that are common to complex systems, the presence of critical thresholds in the dynamics of the system is one of the most important. Recently, there has been interest in the universalities that occur in the behavior of…

The dynamics based on information transfer is proposed as an underlying mechanism for the scale-invariant dynamic critical behavior observed in a variety of systems. We apply the dynamics to the globally-coupled Ising model, which is…

Statistical Mechanics · Physics 2009-11-10 M. Y. Choi , B. J. Kim , B. -G. Yoon , H. Park

Dynamics of Ising models is a much studied phenomenon and has emerged as a rich field of present-day research. An important dynamical feature commonly studied is the quenching phenomenon below the critical temperature. In this thesis we…

Statistical Mechanics · Physics 2016-03-08 Soham Biswas

The behavior of many magnetic and dielectric solids, and the more contemporary magnetic super-lattices, is governed by dipolar interactions. They are anisotropic and long-ranged, having varied consequences ranging from ground states with…

Statistical Mechanics · Physics 2021-08-25 Shikha Kumari , Sanjay Puri , Varsha Banerjee

Habituation - a phenomenon in which a dynamical system exhibits a diminishing response to repeated stimulations that eventually recovers when the stimulus is withheld - is universally observed in living systems from animals to unicellular…

Adaptation and Self-Organizing Systems · Physics 2024-07-26 Matthew Smart , Stanislav Y. Shvartsman , Martin Mönnigmann

We show that the nonlinear stochastic dynamics of a measurement-feedback-based coherent Ising machine (MFB-CIM) in the presence of quantum noise can be exploited to sample degenerate ground and low-energy spin configurations of the Ising…

Universality classes of Ising-like phase transitions are investigated in series of two-dimensional synchronously updated probabilistic cellular automata (PCAs), whose time evolution rules are either of Glauber type or of majority-vote type,…

Statistical Mechanics · Physics 2007-05-23 Kazumasa Takeuchi

We explore the coherent dynamics in a small network of three coupled parametric oscillators and demonstrate the effect of frustration on the persistent beating between them. Since a single-mode parametric oscillator represents an analog of…

How do landscape fragmentation affects ecosystems diversity and stability is an important and complex question in ecology with no simple answer, as spatially separated habitats where species live are highly dynamic rather than just static.…

Chaotic Dynamics · Physics 2016-08-17 Ramesh Arumugam , Partha Sharathi Dutta , Tanmoy Banerjee

Biological systems can rely on collective formation of a metachronal wave in an ensemble of oscillators for locomotion and for fluid transport. We consider one-dimensional chains of phase oscillators with nearest neighbor interactions,…

Biological Physics · Physics 2023-03-15 A. C. Quillen