Related papers: The Edit Distance to $k$-Subsequence Universality
A word $u$ is a scattered factor of $w$ if $u$ can be obtained from $w$ by deleting some of its letters. That is, there exist the (potentially empty) words $u_1,u_2,..., u_n$, and $v_0,v_1,..,v_n$ such that $u = u_1u_2...u_n$ and $w =…
Let S be a finite set of words over an alphabet Sigma. The set S is said to be complete if every word w over the alphabet Sigma is a factor of some element of S*, i.e. w belongs to Fact(S*). Otherwise if S is not complete, we are interested…
Vincular or dashed patterns resemble classical patterns except that some of the letters within an occurrence are required to be adjacent. We prove several infinite families of Wilf-equivalences for k-ary words involving vincular patterns…
We survey the emerging area of compression-based, parameter-free, similarity distance measures useful in data-mining, pattern recognition, learning and automatic semantics extraction. Given a family of distances on a set of objects, a…
An overlap-free (or $\beta$-free) word $w$ over a fixed alphabet $\Sigma$ is extremal if every word obtained from $w$ by inserting a single letter from $\Sigma$ at any position contains an overlap (or a factor of exponent at least $\beta$,…
Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…
The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. A simple dynamic…
We study the average edit distance between two random strings. More precisely, we adapt a technique introduced by Lueker in the context of the average longest common subsequence of two random strings to improve the known upper bound on the…
To any infinite word w over a finite alphabet A we can associate two infinite words min(w) and max(w) such that any prefix of min(w) (resp. max(w)) is the lexicographically smallest (resp. greatest) amongst the factors of w of the same…
We study the fundamental problem of approximating the edit distance of two strings. After an extensive line of research led to the development of a constant-factor approximation algorithm in almost-linear time, recent years have witnessed a…
The edit distance between strings classically assigns unit cost to every character insertion, deletion, and substitution, whereas the Hamming distance only allows substitutions. In many real-life scenarios, insertions and deletions…
The subword complexity of a finite word $w$ of length $N$ is a function which associates to each $n\le N$ the number of all distinct subwords of $w$ having the length $n$. We define the \emph{maximal complexity} C(w) as the maximum of the…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
A set X of partial words over a finite alphabet A is called unavoidable if every two-sided infinite word over A has a factor compatible with an element of X. Unlike the case of a set of words without holes, the problem of deciding whether…
The edit distance of two strings is the minimum number of insertions, deletions, and substitutions of characters needed to transform one string into the other. The textbook dynamic-programming algorithm computes the edit distance of two…
The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…
We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…
Transducers generalise automata by producing output word(s) for each input word, thereby defining a relation over words. A transducer is said to be finite-valued if, for every input word, it produces at most $k$ output words, for some…
Partial words are sequences over a finite alphabet that may contain wildcard symbols, called holes, which match or are compatible with all letters; partial words without holes are said to be full words (or simply words). Given an infinite…
We engineer an algorithm to solve the approximate dictionary matching problem. Given a list of words $\mathcal{W}$, maximum distance $d$ fixed at preprocessing time and a query word $q$, we would like to retrieve all words from…