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Biclustering, also called co-clustering, block clustering, or two-way clustering, involves the simultaneous clustering of both the rows and columns of a data matrix into distinct groups, such that the rows and columns within a group display…

Optimization and Control · Mathematics 2024-12-06 Antonio M. Sudoso

The Small Set Expansion Hypothesis (SSEH) is a conjecture which roughly states that it is NP-hard to distinguish between a graph with a small subset of vertices whose edge expansion is almost zero and one in which all small subsets of…

Computational Complexity · Computer Science 2017-05-11 Pasin Manurangsi

Bipartite graphs are widely used to model relationships between two types of entities. Community search retrieves densely connected subgraphs containing a query vertex, which has been extensively studied on unipartite graphs. However,…

Databases · Computer Science 2020-11-18 Kai Wang , Wenjie Zhang , Xuemin Lin , Ying Zhang , Lu Qin , Yuting Zhang

This study develops a graph search algorithm to find the optimal discrimination path for the binary classification problem. The objective function is defined as the difference of variations between the true positive (TP) and false positive…

Machine Learning · Computer Science 2024-01-10 Qinwu Xu

The Balanced Connected Subgraph problem (BCS) was recently introduced by Bhore et al. (CALDAM 2019). In this problem, we are given a graph $G$ whose vertices are colored by red or blue. The goal is to find a maximum connected subgraph of…

Data Structures and Algorithms · Computer Science 2020-03-11 Yasuaki Kobayashi , Kensuke Kojima , Norihide Matsubara , Taiga Sone , Akihiro Yamamoto

We consider the problem of partitioning a graph into a non-fixed number of non-overlapping subgraphs of maximum density. The density of a partition is the sum of the densities of the subgraphs, where the density of a subgraph is its average…

Computational Complexity · Computer Science 2022-02-17 Cristina Bazgan , Katrin Casel , Pierre Cazals

We consider the problem of finding a subgraph of a given graph minimizing the sum of given functions at vertices evaluated at their subgraph degrees. While the problem is NP-hard already for bipartite graphs when the functions are convex on…

Optimization and Control · Mathematics 2021-04-27 Gabriel Deza , Shmuel Onn

The maximum independent set problem is one of the most important problems in graph algorithms and has been extensively studied in the line of research on the worst-case analysis of exact algorithms for NP-hard problems. In the weighted…

Data Structures and Algorithms · Computer Science 2021-08-31 Sen Huang , Mingyu Xiao , Xiaoyu Chen

The problem of finding dense components of a graph is a widely explored area in data analysis, with diverse applications in fields and branches of study including community mining, spam detection, computer security and bioinformatics. This…

Information Retrieval · Computer Science 2021-03-02 B. D. M. De Zoysa , Y. A. M. M. A. Ali , M. D. I. Maduranga , Indika Perera , Saliya Ekanayake , Anil Vullikanti

We present an exact algorithm for computing all common subgraphs with the maximum number of vertices across multiple graphs. Our approach is further extended to handle the connected Maximum Common Subgraph (MCS), identifying the largest…

Data Structures and Algorithms · Computer Science 2025-04-03 Johannes B. S. Petersen , Akbar Davoodi , Thomas Gärtner , Marc Hellmuth , Daniel Merkle

Biclustering, also known as co-clustering or two-way clustering, simultaneously partitions the rows and columns of a data matrix to reveal submatrices with coherent patterns. Incorporating background knowledge into clustering to enhance…

Optimization and Control · Mathematics 2026-02-24 Antonio M. Sudoso

Graph clustering is an important algorithmic technique for analysing massive graphs, and has been widely applied in many research fields of data science. While the objective of most graph clustering algorithms is to find a vertex set of low…

Data Structures and Algorithms · Computer Science 2025-08-08 Joyentanuj Das , Suranjan De , He Sun

We present a weighted approach to compute a maximum cardinality matching in an arbitrary bipartite graph. Our main result is a new algorithm that takes as input a weighted bipartite graph $G(A\cup B,E)$ with edge weights of $0$ or $1$. Let…

Computational Geometry · Computer Science 2019-03-26 Nathaniel Lahn , Sharath Raghvendra

We consider the incomplete multi-graph matching problem, which is a generalization of the NP-hard quadratic assignment problem for matching multiple finite sets. Multi-graph matching plays a central role in computer vision, e.g., for…

Computer Vision and Pattern Recognition · Computer Science 2024-06-27 Max Kahl , Sebastian Stricker , Lisa Hutschenreiter , Florian Bernard , Bogdan Savchynskyy

A matching in a graph is a set of edges no two of which share a common vertex. A matching M is an induced matching if no edge connects two edges of M. The problem of finding a maximum induced matching is known to be NP-hard in general and…

Discrete Mathematics · Computer Science 2014-04-28 Ruzayn Quaddoura

In this paper, we propose a depth-first search (DFS) algorithm for searching maximum matchings in general graphs. Unlike blossom shrinking algorithms, which store all possible alternative alternating paths in the super-vertices shrunk from…

Data Structures and Algorithms · Computer Science 2022-04-20 Tony T. Lee , Bojun Lu , Hanli Chu

We study the problem of finding and characterizing subgraphs with small \textit{bipartiteness ratio}. We give a bicriteria approximation algorithm \verb|SwpDB| such that if there exists a subset $S$ of volume at most $k$ and bipartiteness…

Data Structures and Algorithms · Computer Science 2013-09-19 Angsheng Li , Pan Peng

We consider the maximum vertex-weighted matching problem (MVM) for non-bipartite graphs. In earlier work we have described a 2/3-approximation algorithm for the MVM on bipartite graphs (Dobrian, Halappanavar, Pothen and Al-Herz, SIAM J.…

Data Structures and Algorithms · Computer Science 2019-02-18 Ahmed Al-Herz , Alex Pothen

Subgraph enumeration problems ask to output all subgraphs of an input graph that belongs to the specified graph class or satisfy the given constraint. These problems have been widely studied in theoretical computer science. As far, many…

Data Structures and Algorithms · Computer Science 2018-07-03 Kunihiro Wasa , Takeaki Uno

We study the problem of partitioning the edges of a $d$-uniform hypergraph $H$ into a family $F$ of complete $d$-partite hypergraphs ($d$-cliques). We show that there is a partition $F$ in which every vertex $v \in V(H)$ belongs to at most…