Related papers: Substring Complexity in Sublinear Space
Tensor completion exhibits an interesting computational-statistical gap in terms of the number of samples needed to perform tensor estimation. While there are only $\Theta(tn)$ degrees of freedom in a $t$-order tensor with $n^t$ entries,…
Motivated by applications in DNA-based storage, we study explicit encoding and decoding schemes of binary strings satisfying locally balanced constraints, where the $(\ell,\delta)$-locally balanced constraint requires that the weight of any…
We prove the full equivalence between Assembly Theory (AT) and Shannon Entropy via a method based upon the principles of statistical compression renamed `assembly index' that belongs to the LZ family of popular compression algorithms (ZIP,…
A Longest Common Extension (LCE) query on a text $T$ of length $N$ asks for the length of the longest common prefix of suffixes starting at given two positions. We show that the signature encoding $\mathcal{G}$ of size $w = O(\min(z \log N…
The string corrections to the Riemann Curvature tensor are found to first order in the string slope parameter, here proportional to $\g$. This is done for D=10 supergravity, the presumed low energy limit of string theory. We follow the…
Given a string $T$ of length $N$, the goal of grammar compression is to construct a small context-free grammar generating only $T$. Among existing grammar compression methods, RePair (recursive paring) [Larsson and Moffat, 1999] is notable…
Drawing on various notions from theoretical computer science, we present a novel numerical approach, motivated by the notion of algorithmic probability, to the problem of approximating the Kolmogorov-Chaitin complexity of short strings. The…
We investigate symbolic sequences and in particular information carriers as e.g. books and DNA-strings. First the higher order Shannon entropies are calculated, a characteristic root law is detected. Then the algorithmic entropy is…
In computational biology, tandem duplication is an important biological phenomenon which can occur either at the genome or at the DNA level. A tandem duplication takes a copy of a genome segment and inserts it right after the segment - this…
We construct $\mathbb{Z}_N$ orbifolds of the ten-dimensional heterotic string theories appropriate for implementing the stringy replica method for the calculation of quantum entanglement entropy. A novel feature for the heterotic string is…
This study aims to publish a novel similarity metric to increase the speed of comparison operations. Also the new metric is suitable for distance-based operations among strings. Most of the simple calculation methods, such as string length…
We present an efficient algorithm for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP $\mathcal{T}$ of size $n$ that represents string $T$, the algorithm…
In this note we expose some surprising connections between string theory and statistical inference. We consider a large collective of agents sweeping out a family of nearby statistical models for an M-dimensional manifold of statistical…
We study the problem of indexing and compressing tries using a BWT-based approach. Specifically, we consider a succinct and compressed representation of the XBWT of Ferragina et al.\ [FOCS '05, JACM '09] corresponding to the analogous of…
A Straight-Line Program (SLP) for a string $T$ is a context-free grammar in Chomsky normal form that derives $T$ only, which can be seen as a compressed form of $T$. Kida et al.\ introduced collage systems [Theor. Comput. Sci., 2003] to…
The entanglement entropy of a subsystem $A$ of a quantum system is expressed, in the replica method, through analytic continuation with respect to n of the trace of the n-th power of the reduced density matrix $\tr\rho_A^n$. We study the…
In this paper, we introduce a variant of spectral sparsification, called probabilistic $(\varepsilon,\delta)$-spectral sparsification. Roughly speaking, it preserves the cut value of any cut $(S,S^{c})$ with an $1\pm\varepsilon$…
The Burrows-Wheeler-Transform (BWT), a reversible string transformation, is one of the fundamental components of many current data structures in string processing. It is central in data compression, as well as in efficient query algorithms…
We investigate the longest common substring problem for encoded sequences and its asymptotic behaviour. The main result is a strong law of large numbers for a re-scaled version of this quantity, which presents an explicit relation with the…
Entropy is a fundamental property of both classical and quantum systems, spanning myriad theoretical and practical applications in physics and computer science. We study the problem of obtaining estimates to within a multiplicative factor…