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Multi-relational graph is a ubiquitous and important data structure, allowing flexible representation of multiple types of interactions and relations between entities. Similar to other graph-structured data, link prediction is one of the…

Knowledge graphs are graphical representations of large databases of facts, which typically suffer from incompleteness. Inferring missing relations (links) between entities (nodes) is the task of link prediction. A recent state-of-the-art…

Machine Learning · Computer Science 2019-09-12 Ivana Balažević , Carl Allen , Timothy M. Hospedales

The links in many real networks are evolving with time. The task of dynamic link prediction is to use past connection histories to infer links of the network at a future time. How to effectively learn the temporal and structural pattern of…

Social and Information Networks · Computer Science 2023-06-27 Chaokai Wu , Yansong Wang , Tao Jia

This paper explores the ability of Graph Neural Networks (GNNs) in learning various forms of information for link prediction, alongside a brief review of existing link prediction methods. Our analysis reveals that GNNs cannot effectively…

Social and Information Networks · Computer Science 2025-12-09 Shuming Liang , Yu Ding , Zhidong Li , Bin Liang , Siqi Zhang , Yang Wang , Fang Chen

Conformal prediction has become increasingly popular for quantifying the uncertainty associated with machine learning models. Recent work in graph uncertainty quantification has built upon this approach for conformal graph prediction. The…

Machine Learning · Computer Science 2025-05-21 Pranav Maneriker , Aditya T. Vadlamani , Anutam Srinivasan , Yuntian He , Ali Payani , Srinivasan Parthasarathy

Graph auto-encoders have proved to be useful in network embedding task. However, current models only consider explicit structures and fail to explore the informative latent structures cohered in networks. To address this issue, we propose a…

Machine Learning · Computer Science 2021-10-01 Minglong Lei , Yong Shi , Lingfeng Niu

Rule mining on knowledge graphs allows for explainable link prediction. Contrarily, embedding-based methods for link prediction are well known for their generalization capabilities, but their predictions are not interpretable. Several…

Artificial Intelligence · Computer Science 2024-06-17 N'Dah Jean Kouagou , Arif Yilmaz , Michel Dumontier , Axel-Cyrille Ngonga Ngomo

The problem of unsupervised learning node embeddings in graphs is one of the important directions in modern network science. In this work we propose a novel framework, which is aimed to find embeddings by \textit{discriminating…

Machine Learning · Statistics 2020-01-24 Stanislav Tsepa , Maxim Panov

Graph neural networks (GNNs) have shown prominent performance on attributed network embedding. However, existing efforts mainly focus on exploiting network structures, while the exploitation of node attributes is rather limited as they only…

Machine Learning · Computer Science 2023-07-25 Qiaoyu Tan , Xin Zhang , Xiao Huang , Hao Chen , Jundong Li , Xia Hu

As a fundamental problem in many different fields, link prediction aims to estimate the likelihood of an existing link between two nodes based on the observed information. Since this problem is related to many applications ranging from…

Physics and Society · Physics 2014-10-01 Hao Liao , An Zeng , Yi-Cheng Zhang

We propose a simple discrete time semi-supervised graph embedding approach to link prediction in dynamic networks. The learned embedding reflects information from both the temporal and cross-sectional network structures, which is performed…

Machine Learning · Statistics 2016-10-17 Ryohei Hisano

Network Embedding (NE) methods, which map network nodes to low-dimensional feature vectors, have wide applications in network analysis and bioinformatics. Many existing NE methods rely only on network structure, overlooking other…

Artificial Intelligence · Computer Science 2019-06-21 Sotiris Kotitsas , Dimitris Pappas , Ion Androutsopoulos , Ryan McDonald , Marianna Apidianaki

Graph neural networks have demonstrated remarkable success in predicting molecular properties by leveraging the rich structural information encoded in molecular graphs. However, their black-box nature reduces interpretability, which limits…

Machine Learning · Computer Science 2025-08-22 Sebastian Musiał , Bartosz Zieliński , Tomasz Danel

Link prediction in graphs is a task that has been widely investigated. It has been applied in various domains such as knowledge graph completion, content/item recommendation, social network recommendations and so on. The initial focus of…

Social and Information Networks · Computer Science 2023-02-07 Nayana Bannur , Mashrin Srivastava , Harsha Vardhan

In this paper, we consider the problem of inferring the sign of a link based on limited sign data in signed networks. Regarding this link sign prediction problem, SDGNN (Signed Directed Graph Neural Networks) provides the best prediction…

Machine Learning · Computer Science 2023-05-18 Zhihong Fang , Shaolin Tan , Yaonan Wang

In this paper, we provide a theory of using graph neural networks (GNNs) for multi-node representation learning (where we are interested in learning a representation for a set of more than one node, such as link). We know that GNN is…

Machine Learning · Computer Science 2022-01-19 Muhan Zhang , Pan Li , Yinglong Xia , Kai Wang , Long Jin

Link prediction is the task of inferring missing links between entities in knowledge graphs. Embedding-based methods have shown effectiveness in addressing this problem by modeling relational patterns in triples. However, the link…

Computation and Language · Computer Science 2024-03-05 Miao Peng , Ben Liu , Qianqian Xie , Wenjie Xu , Hua Wang , Min Peng

For knowledge graph completion, two major types of prediction models exist: one based on graph embeddings, and the other based on relation path rule induction. They have different advantages and disadvantages. To take advantage of both…

Machine Learning · Computer Science 2021-11-02 Yushi Hirose , Masashi Shimbo , Taro Watanabe

Cross-graph Relational Learning (CGRL) refers to the problem of predicting the strengths or labels of multi-relational tuples of heterogeneous object types, through the joint inference over multiple graphs which specify the internal…

Machine Learning · Computer Science 2016-05-09 Hanxiao Liu , Yiming Yang

We propose an entity-agnostic representation learning method for handling the problem of inefficient parameter storage costs brought by embedding knowledge graphs. Conventional knowledge graph embedding methods map elements in a knowledge…

Computation and Language · Computer Science 2023-02-06 Mingyang Chen , Wen Zhang , Zhen Yao , Yushan Zhu , Yang Gao , Jeff Z. Pan , Huajun Chen