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Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

We consider the message complexity of verifying whether a given subgraph of the communication network forms a tree with specific properties both in the KT-$\rho$ (nodes know their $\rho$-hop neighborhood, including node IDs) and the KT-$0$…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-01 Shay Kutten , Peter Robinson , Ming Ming Tan

Various modifications of decision trees have been extensively used during the past years due to their high efficiency and interpretability. Tree node splitting based on relevant feature selection is a key step of decision tree learning, at…

Machine Learning · Computer Science 2017-09-05 Dmitry Ignatov , Andrey Ignatov

We describe the structure of those graphs that have largest spectral radius in the class of all connected graphs with a given degree sequence. We show that in such a graph the degree sequence is non-increasing with respect to an ordering of…

Combinatorics · Mathematics 2008-10-07 Tuerker Biyikoglu , Josef Leydold

In the Steiner Path Aggregation Problem, our goal is to aggregate paths in a directed network into a single arborescence without significantly disrupting the paths. In particular, we are given a directed multigraph with colored arcs, a…

Data Structures and Algorithms · Computer Science 2025-10-03 Da Qi Chen , Daniel Hathcock , D Ellis Hershkowitz , R. Ravi

In this paper, we propose a distributed algorithm, called Directed-Distributed Gradient Descent (D-DGD), to solve multi-agent optimization problems over directed graphs. Existing algorithms mostly deal with similar problems under the…

Optimization and Control · Mathematics 2016-02-02 Chenguang Xi , Qiong Wu , Usman A. Khan

We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…

Data Structures and Algorithms · Computer Science 2024-07-12 Kristóf Bérczi , Tamás Király , Yusuke Kobayashi , Yutaro Yamaguchi , Yu Yokoi

In many situations, it would be useful to know not just the best phylogenetic tree for a given data set, but the collection of high-quality trees. This goal is typically addressed using Bayesian techniques, however, current Bayesian methods…

Populations and Evolution · Quantitative Biology 2023-10-27 Will Dumm , Mary Barker , William Howard-Snyder , William S. DeWitt , Frederick A. Matsen

We study the problem of maintaining a breadth-first spanning tree (BFS tree) in partially dynamic distributed networks modeling a sequence of either failures or additions of communication links (but not both). We present deterministic…

Data Structures and Algorithms · Computer Science 2018-03-02 Monika Henzinger , Sebastian Krinninger , Danupon Nanongkai

Directed acyclic graphs (DAGs) and associated probability models are widely used to model neural connectivity and communication channels. In many experiments, data are collected from multiple subjects whose connectivities may differ but are…

Methodology · Statistics 2014-11-17 Chris J. Oates , Lilia Carneiro da Costa , Tom Nichols

We study a social network consisting of agents organized as a hierarchical M-ary rooted tree, common in enterprise and military organizational structures. The goal is to aggregate information to solve a binary hypothesis testing problem.…

Social and Information Networks · Computer Science 2015-06-05 Zhenliang Zhang , Edwin K. P. Chong , Ali Pezeshki , William Moran , Stephen D. Howard

We propose a new arrangement problem on directed graphs, Maximum Directed Linear Arrangement (MaxDLA). This is a directed variant of a similar problem for undirected graphs, in which however one seeks maximum and not minimum; this problem…

Data Structures and Algorithms · Computer Science 2025-12-18 Matt DeVos , Kathryn Nurse

We consider the NP-hard Tree Containment problem that has important applications in phylogenetics. The problem asks if a given leaf-labeled network contains a subdivision of a given leaf-labeled tree. We develop a fast algorithm for the…

Computational Complexity · Computer Science 2017-02-22 Mathias Weller

Social networks represent nowadays in many contexts the main source of information transmission and the way opinions and actions are influenced. For instance, generic advertisements are way less powerful than suggestions from our contacts.…

Neural and Evolutionary Computing · Computer Science 2021-05-03 Kateryna Konotopska , Giovanni Iacca

The \emph{linear vertex arboricity} of a graph is the smallest number of sets into which the vertices of a graph can be partitioned so that each of these sets induces a linear forest. Chaplick et al. [JoCG 2020] showed that, somewhat…

Computational Complexity · Computer Science 2025-05-27 Alexander Erhardt , Alexander Wolff

Limited dominating broadcasts were proposed as a variant of dominating broadcasts, where the broadcast function is upper bounded. As a natural extension of domination, we consider dominating $2$-broadcasts along with the associated…

Combinatorics · Mathematics 2017-10-18 José Cáceres , Carmen Hernando , Mercè Mora , Ignacio M. Pelayo , María Luz Puertas

Our goal is to infer the topology of a network when (i) we can send probes between sources and receivers at the edge of the network and (ii) intermediate nodes can perform simple network coding operations, i.e., additions. Our key intuition…

Networking and Internet Architecture · Computer Science 2013-02-07 Pegah Sattari , Christina Fragouli , Athina Markopoulou

For a given graph $G$, a maximum internal spanning tree of $G$ is a spanning tree of $G$ with maximum number of internal vertices. The Maximum Internal Spanning Tree (MIST) problem is to find a maximum internal spanning tree of the given…

Data Structures and Algorithms · Computer Science 2021-12-24 Gopika Sharma , Arti Pandey , Michael C. Wigal

Daily internet communication relies heavily on tree-structured graphs, embodied by popular data formats such as XML and JSON. However, many recent generative (probabilistic) models utilize neural networks to learn a probability distribution…

Machine Learning · Computer Science 2024-08-20 Milan Papež , Martin Rektoris , Tomáš Pevný , Václav Šmídl

Let be given a graph $G=(V,E)$ whose edge set is partitioned into a set $R$ of \emph{red} edges and a set $B$ of \emph{blue} edges, and assume that red edges are weighted and form a spanning tree of $G$. Then, the \emph{Stackelberg Minimum…

Computer Science and Game Theory · Computer Science 2014-07-07 Davide Bilò , Luciano Gualà , Stefano Leucci , Guido Proietti
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