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Related papers: Motifs for processes on networks

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The structure of the network can be described by motifs, which are subgraphs that often repeat themselves. In order to understand the structure of network motifs, it is of great importance to study subgraphs from the perspective of…

General Topology · Mathematics 2019-10-25 Ruize Gao , Ying Zhao

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera

Understanding the function of network motifs in an attempt to gain insight into how their combinations create larger reaction networks that drive cellular functions, has been a longstanding pursuit of systems biology. One specific objective…

Molecular Networks · Quantitative Biology 2025-09-24 Nguyen H. N. Tran , Federico Frascoli , Andrew H. A. Clayton

In neural networks with identical neurons, the matrix of connection weights completely describes the network structure and thereby determines how it is processing information. However, due to the non-linearity of these systems, it is not…

Neurons and Cognition · Quantitative Biology 2018-11-14 Patrick Krauss , Alexandra Zankl , Achim Schilling , Holger Schulze , Claus Metzner

In complex systems, groups of interacting objects may form prevalent and persistent spatiotemporal patterns, which we refer to as motifs. These motifs can exhibit features that reveal how individual objects interact with one another.…

Biological Physics · Physics 2025-12-12 Ying Chen Lim , Rakesh Das , Tetsuya Hiraiwa , N. Duane Loh

A determinant property of the structure of a biological network is the distribution of local connectivity patterns, i.e., network motifs. In this work, a method for creating directed, unweighted networks while promoting a certain…

Social and Information Networks · Computer Science 2016-07-29 Tuomo Mäki-Marttunen

Investigating the frequency and distribution of small subgraphs with a few nodes/edges, i.e., motifs, is an effective analysis method for static networks. Motif-driven analysis is also useful for temporal networks where the spectrum of…

Social and Information Networks · Computer Science 2021-05-04 Penghang Liu , Valerio Guarrasi , A. Erdem Sarıyüce

To any inhibition-dominated threshold-linear network (TLN) we can associate a directed graph that captures the pattern of strong and weak inhibition between neurons. Robust motifs are graphs for which the structure of fixed points in the…

Neurons and Cognition · Quantitative Biology 2019-12-18 Carina Curto , Christopher Langdon , Katherine Morrison

Graph theory constitutes a widely used and established field providing powerful tools for the characterization of complex networks. The intricate topology of networks can also be investigated by means of the collective dynamics observed in…

Physics and Society · Physics 2018-05-09 Matthieu Gilson , Nikos E Kouvaris , Gustavo Deco , Gorka Zamora-López

The analysis of small recurrent substructures, so called network motifs, has become a standard tool of complex network science to unveil the design principles underlying the structure of empirical networks. In many natural systems network…

Quantitative Methods · Quantitative Biology 2015-07-08 Pavel V. Paulau , Christoph Feenders , Bernd Blasius

The identification of motifs--subgraphs that appear significantly more often in a particular network than in an ensemble of randomized networks--has become a ubiquitous method for uncovering potentially important subunits within networks…

Molecular Networks · Quantitative Biology 2010-08-27 Reid Ginoza , Andrew Mugler

A deluge of new data on social, technological and biological networked systems suggests that a large number of interactions among system units are not limited to pairs, but rather involve a higher number of nodes. To properly encode such…

Physics and Society · Physics 2023-11-08 Quintino Francesco Lotito , Federico Musciotto , Alberto Montresor , Federico Battiston

The observation that some subgraphs, called motifs, appear more often in real networks than in their randomized counterparts has attracted much attention in the scientific community. In the prevalent approach the detection of motifs is…

Molecular Networks · Quantitative Biology 2014-08-28 Anatol E. Wegner

Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior…

Statistical Mechanics · Physics 2015-06-24 M. E. J. Newman

Detecting strong ties among users in social and information networks is a fundamental operation that can improve performance on a multitude of personalization and ranking tasks. Strong-tie edges are often readily obtained from the social…

Social and Information Networks · Computer Science 2017-03-28 Rahmtin Rotabi , Krishna Kamath , Jon Kleinberg , Aneesh Sharma

Many data analysis problems rely on dynamic networks, such as social or communication network analyses. Providing a scalable overview of long sequences of such dynamic networks remains challenging due to the underlying large-scale data…

Social and Information Networks · Computer Science 2022-08-26 Eren Cakmak , Johannes Fuchs , Dominik Jäckle , Tobias Schreck , Ulrik Brandes , Daniel Keim

Analyzing and characterizing the differences between networks is a fundamental and challenging problem in network science. Previously, most network comparison methods that rely on topological properties have been restricted to measuring…

Physics and Society · Physics 2024-01-15 Chenwei Xie , Qiao Ke , Haoyu Chen , Chuang Liu , Xiu-Xiu Zhan

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Networks are abundant in biological systems. Small sized over-represented network motifs have been discovered, and it has been suggested that these constitute functional building blocks. We ask whether larger dynamical network motifs exist…

Neural and Evolutionary Computing · Computer Science 2018-09-25 C. H. Huck Yang , Rise Ooi , Tom Hiscock , Victor Eguiluz , Jesper Tegnér

Background: Networks in different domains are characterized by similar global characteristics while differing in local structures. To further extend this concept, we investigated network regularities on a fine scale in order to examine the…

Molecular Networks · Quantitative Biology 2019-07-12 Alberto Calderone , Gianni Cesareni