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Evolving trees arise in many real-life scenarios from computer file systems and dynamic call graphs, to fake news propagation and disease spread. Most layout algorithms for static trees do not work well in an evolving setting (e.g., they…

Computational Geometry · Computer Science 2022-08-29 Kathryn Gray , Mingwei Li , Reyan Ahmed , Stephen Kobourov

It has been shown that geometrical, structural properties vary along the length of the aortic arch. There is a scarcity of studies focus on the variation in the vessel wall thickness of aortic arch. The central premise of this study is that…

Tissues and Organs · Quantitative Biology 2018-06-21 Xiaochang Leng , Xingjian Liu , Will Toress , Tarek Shazly

Whilst grading neurovascular abnormalities is critical for prompt surgical repair, no statistical markers are currently available for predicting the risk of adverse events, such as stroke, and the overall resilience of a network to vascular…

Quantitative Methods · Quantitative Biology 2019-10-30 Stefano Moriconi , Rafael Rehwald , Maria A. Zuluaga , H. Rolf Jäger , Parashkev Nachev , Sébastien Ourselin , M. Jorge Cardoso

The active field of Functional Data Analysis (about understanding the variation in a set of curves) has been recently extended to Object Oriented Data Analysis, which considers populations of more general objects. A particularly challenging…

Statistics Theory · Mathematics 2008-10-07 Burcu Aydin , Gabor Pataki , Haonan Wang , Elizabeth Bullitt , J. S. Marron

Five new algorithms were proposed in order to optimize well conditioning of structural matrices. Along with decreasing the size and duration of analyses, minimizing analytical errors is a critical factor in the optimal computer analysis of…

Numerical Analysis · Mathematics 2021-09-21 Farzad S. Dizaji , Mehrdad S. Dizaji

The morphology and hierarchy of the vascular systems are essential for perfusion in supporting metabolism. In human retina, one of the most energy-demanding organs, retinal circulation nourishes the entire inner retina by an intricate…

Image and Video Processing · Electrical Eng. & Systems 2024-02-16 Siyi Chen , Amir H. Kashani , Ji Yi

We consider optimal transport based distributionally robust optimization (DRO) problems with locally strongly convex transport cost functions and affine decision rules. Under conventional convexity assumptions on the underlying loss…

Optimization and Control · Mathematics 2021-04-27 Jose Blanchet , Karthyek Murthy , Fan Zhang

Large graphs abound in machine learning, data mining, and several related areas. A useful step towards analyzing such graphs is that of obtaining certain summary statistics - e.g., or the expected length of a shortest path between two…

Machine Learning · Statistics 2013-12-02 Mikhail Langovoy , Suvrit Sra

We are interested in unsupervised reconstruction of complex near-capillary vasculature with thousands of bifurcations where supervision and learning are infeasible. Unsupervised methods can use many structural constraints, e.g. topology,…

Computer Vision and Pattern Recognition · Computer Science 2021-03-29 Zhongwen Zhang , Dmitrii Marin , Maria Drangova , Yuri Boykov

Design of robotic systems that safely and efficiently operate in uncertain operational conditions, such as rehabilitation and physical assistance robots, remains an important challenge in the field. Current methods for the design of energy…

Robotics · Computer Science 2019-02-07 Edgar Bolívar , Siavash Rezazadeh , Tyler Summers , Robert D. Gregg

Vascular networks play a key role in the development, function, and survival of many organisms, facilitating transport of nutrients and other critical factors within and between systems. The development of these vessel networks has been…

Tissues and Organs · Quantitative Biology 2022-03-23 Benjamin J. Walker , Adriana T. Dawes

Although the preservation of shape continuity and physiological anatomy is a natural assumption in the segmentation of medical images, it is often neglected by deep learning methods that mostly aim for the statistical modeling of input data…

Computer Vision and Pattern Recognition · Computer Science 2023-05-01 Yousef Yeganeh , Azade Farshad , Goktug Guevercin , Amr Abu-zer , Rui Xiao , Yongjian Tang , Ehsan Adeli , Nassir Navab

Survival analysis concerns the task of predicting the time until an event occurs. Often used in the medical field, survival analysis deals with incomplete (i.e., censored) data, for instance, from patients who did not experience the event…

Machine Learning · Computer Science 2026-05-29 Thalea Schlender , Peter A. N. Bosman , Tanja Alderliesten

Transport networks are crucial to the functioning of natural systems and technological infrastructures. For flow networks in many scenarios, such as rivers or blood vessels, acyclic networks (i.e., trees) are optimal structures when…

Adaptation and Self-Organizing Systems · Physics 2019-12-05 Erik Andreas Martens , Konstantin Klemm

The brain's connectome and the vascular system are examples of physical networks whose tangible nature influences their structure, layout, and ultimately their function. The material resources required to build and maintain these networks…

Biological Physics · Physics 2025-09-30 Xiangyi Meng , Benjamin Piazza , Csaba Both , Baruch Barzel , Albert-László Barabási

A tremendous range of design tasks in materials, physics, and biology can be formulated as finding the optimum of an objective function depending on many parameters without knowing its closed-form expression or the derivative. Traditional…

Machine Learning · Computer Science 2024-04-08 Ye Wei , Bo Peng , Ruiwen Xie , Yangtao Chen , Yu Qin , Peng Wen , Stefan Bauer , Po-Yen Tung

A system comprised of an elastic solid and its response to an external random force sequence is shown to behave based on the principles of the theory of algorithmic complexity and randomness. The solid distorts the randomness of an input…

Computational Complexity · Computer Science 2008-11-06 J. Ratsaby , J. Chaskalovic

The present work provides a new approach to evolve ligand structures which represent possible drug to be docked to the active site of the target protein. The structure is represented as a tree where each non-empty node represents a…

Neural and Evolutionary Computing · Computer Science 2016-11-15 Avishek Ghosh , Arnab Ghosh , Arkabandhu Chowdhury , Jubin Hazra

An important feature of many complex systems, both natural and artificial, is the structure and organization of their interaction networks with interesting properties. Here we present a theory of self-organization by evolutionary adaptation…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Venkat Venkatasubramanian , Santhoji Katare , Priyan R. Patkar , Fangping Mu

Why does the mammalian vascular tree maintain a conserved branching exponent $\alpha^* \approx 2.72$ across a $10^7$-fold range in body mass, despite a fundamental shift from viscous to wave-dominated transport? We prove this universality…

Biological Physics · Physics 2026-05-29 Riccardo Marchesi