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To unveil the logic of cell from a level of chemical reaction dynamics, we need to clarify how ensemble of chemicals can autonomously produce the set of chemical, without assuming a specific external control echanism. A cell consists of a…

Molecular Networks · Quantitative Biology 2007-05-23 Kunihiko Kaneko

This paper contains description of such knowledge representation model as Object-Oriented Dynamic Network (OODN), which gives us an opportunity to represent knowledge, which can be modified in time, to build new relations between objects…

Artificial Intelligence · Computer Science 2015-10-15 Dmytro Terletskyi , Alexandr Provotar

Cumulative cultural evolution occurs when adaptive innovations are passed down to consecutive generations through social learning. This process has shaped human technological innovation, but also occurs in non-human species. While it is…

Populations and Evolution · Quantitative Biology 2023-07-26 Edwin S. Dalmaijer

Autocatalytic sets are sets of entities that mutually catalyse each other's production through chemical reactions from a basic food source. Recently, the reflexively autocatalytic and food generated theory has introduced a formal definition…

Adaptation and Self-Organizing Systems · Physics 2020-09-15 Alessandro Ravoni

We introduce a novel evolutionary algorithm (EA) with a semantic network-based representation. For enabling this, we establish new formulations of EA variation operators, crossover and mutation, that we adapt to work on semantic networks.…

Neural and Evolutionary Computing · Computer Science 2015-03-02 Atilim Gunes Baydin , Ramon Lopez de Mantaras , Santiago Ontanon

It is proposed that the ability of humans to flourish in diverse environments and evolve complex cultures reflects the following two underlying cognitive transitions. The transition from the coarse-grained associative memory of Homo habilis…

Neurons and Cognition · Quantitative Biology 2013-08-26 Liane Gabora , Diederik Aerts

Human intelligence relies in part on our brains' ability to create abstract mental models that succinctly capture the hidden blueprint of our reality. Such abstract world models notably allow us to rapidly navigate novel situations by…

Artificial Intelligence · Computer Science 2023-12-12 Quentin RV. Ferry , Joshua Ching , Takashi Kawai

Living neural networks emerge through a process of growth and self-organization that begins with a single cell and results in a brain, an organized and functional computational device. Artificial neural networks, however, rely on…

Neural and Evolutionary Computing · Computer Science 2019-06-05 Guruprasad Raghavan , Matt Thomson

We introduce a model for the emergence of innovations, in which cognitive processes are described as random walks on the network of links among ideas or concepts, and an innovation corresponds to the first visit of a node. The transition…

Physics and Society · Physics 2018-01-25 Iacopo Iacopini , Staša Milojević , Vito Latora

This manuscript explores the evolutionary emergence of semantic closure -- the self-referential mechanism through which symbols actively construct and interpret their own functional contexts -- by integrating concepts from relational…

Biological Physics · Physics 2025-10-21 Amahury J. López-Díaz , Carlos Gershenson

This paper considers neural representation through the lens of active inference, a normative framework for understanding brain function. It delves into how living organisms employ generative models to minimize the discrepancy between…

Neurons and Cognition · Quantitative Biology 2023-10-24 Giovanni Pezzulo , Leo D'Amato , Francesco Mannella , Matteo Priorelli , Toon Van de Maele , Ivilin Peev Stoianov , Karl Friston

This paper presents a new type of evolutionary algorithm (EA) based on the concept of "meme", where the individuals forming the population are represented by semantic networks and the fitness measure is defined as a function of the…

Neural and Evolutionary Computing · Computer Science 2014-05-02 Atilim Gunes Baydin , Ramon Lopez de Mantaras

Because human cognition is creative and socially situated, knowledge accumulates, diffuses, and gets applied in new contexts, generating cultural analogs of phenomena observed in population genetics such as adaptation and drift. It is…

Adaptation and Self-Organizing Systems · Physics 2013-08-26 Liane Gabora

Large language models often reason beyond surface tokens, but the internal stage at which token-level information becomes abstract relational structure remains unclear. We investigate this question by analyzing how attention heads and…

Artificial Intelligence · Computer Science 2026-05-22 Junjie Zhang , Zhen Shen , Xisong Dong , Gang Xiong

Self-Other Reorganization (SOR) is a theory of how interacting entities or individuals, each of which can be described as an autocatalytic network, collectively exhibit cumulative, adaptive, open-ended change, or evolution. Zachar et al.'s…

Populations and Evolution · Quantitative Biology 2024-10-10 Liane Gabora , Mike Steel

The speed and transformative power of human cultural evolution is evident from the change it has wrought on our planet. This chapter proposes a human computation program aimed at (1) distinguishing algorithmic from non-algorithmic…

Multiagent Systems · Computer Science 2013-10-24 Liane Gabora

Neural-symbolic approaches to machine learning incorporate the advantages from both connectionist and symbolic methods. Typically, these models employ a first module based on a neural architecture to extract features from complex data.…

Artificial Intelligence · Computer Science 2023-07-19 Jaime de Miguel-Rodriguez , Fernando Sancho-Caparrini

We create an artificial system of agents (attention-based neural networks) which selectively exchange messages with each-other in order to study the emergence of memetic evolution and how memetic evolutionary pressures interact with genetic…

Artificial Intelligence · Computer Science 2021-04-09 Nicholas Guttenberg , Marek Rosa

What role does phenotypic complexity play in the systems-level function of an embodied agent? The organismal phenotype is a topologically complex structure that interacts with a genotype, developmental physics, and an informational…

Neurons and Cognition · Quantitative Biology 2022-08-15 Bradly Alicea , Jesse Parent

The remarkable ecological success of humans is often attributed to our ability to develop complex cultural artefacts that enable us to cope with environmental challenges. The evolution of complex culture (cumulative cultural evolution) is…

Physics and Society · Physics 2025-04-10 Agnieszka Czaplicka , Fabian Baumann , Iyad Rahwan