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Large systems biology projects can encompass several workgroups often located in different countries. An overview about existing data standards in systems biology and the management, storage, exchange and integration of the generated data…

Databases · Computer Science 2009-12-15 Gerhard Mayer

To increase performance and efficiency, systems use FPGAs as reconfigurable accelerators. A key challenge in designing these systems is partitioning computation between processors and an FPGA. An appropriate division of labor may be…

Hardware Architecture · Computer Science 2021-07-21 Endri Bezati , Mahyar Emami , Jörn Janneck , James Larus

Exascale computers offer transformative capabilities to combine data-driven and learning-based approaches with traditional simulation applications to accelerate scientific discovery and insight. However, these software combinations and…

The heterogeneous edge-cloud computing paradigm can provide a more optimal direction to deploy scientific workflows than traditional distributed computing or cloud computing environments. Due to the different sizes of scientific datasets…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-14 Xin Du , Songtao Tang , Zhihui Lu , Keke Gai , Jie Wu , Patrick C. K. Hung

Advances in technology and computing hardware are enabling scientists from all areas of science to produce massive amounts of data using large-scale simulations or observational facilities. In this era of data deluge, effective coordination…

Databases · Computer Science 2015-03-31 Spyros Blanas , Surendra Byna

With the growing complexity of computational and experimental facilities, many scientific researchers are turning to machine learning (ML) techniques to analyze large scale ensemble data. With complexities such as multi-component workflows,…

Big data processing applications are becoming more and more complex. They are no more monolithic in nature but instead they are composed of decoupled analytical processes in the form of a workflow. One type of such workflow applications is…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-19 Mutaz Barika , Saurabh Garg , Andrew Chan , Rodrigo N. Calheiros

Complex scientific experiments from various domains are typically modeled as workflows and executed on large-scale machines using a Parallel Workflow Management System (WMS). Since such executions usually last for hours or days, some WMSs…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-13 Renan Souza , Vítor Silva , Alexandre A. B. Lima , Daniel de Oliveira , Patrick Valduriez , Marta Mattoso

The increasing growth of data volume, and the consequent explosion in demand for computational power, are affecting scientific computing, as shown by the rise of extreme data scientific workflows. As the need for computing power increases,…

Emerging Technologies · Computer Science 2024-04-17 Sandeep Suresh Cranganore , Vincenzo De Maio , Ivona Brandic , Ewa Deelman

Heterogeneous Multi-Embodied Agent Systems involve coordinating multiple embodied agents with diverse capabilities to accomplish tasks in dynamic environments. This process requires the collection, generation, and consumption of massive,…

Artificial Intelligence · Computer Science 2026-03-31 Xujia Li , Xin Li , Junquan Huang , Beirong Cui , Zibin Wu , Lei Chen

Efficient data management is a key component in achieving good performance for scientific workflows in distributed environments. Workflow applications typically communicate data between tasks using files. When tasks are distributed, these…

Instrumentation and Methods for Astrophysics · Physics 2015-03-17 Gideon Juve , Ewa Deelman , Karan Vahi , Gaurang Mehta , Bruce Berriman , Benjamin P. Berman , Phil Maechling

Scientific workflows consist of thousands of highly parallelized tasks executed in a distributed environment involving many components. Automatic tracing and investigation of the components' and tasks' performance metrics, traces, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-19 Jonathan Bader , Joel Witzke , Soeren Becker , Ansgar Lößer , Fabian Lehmann , Leon Doehler , Anh Duc Vu , Odej Kao

Data-intensive scientific workflows increasingly rely on high-performance computing (HPC) systems, complementing traditional Grid and Cloud platforms. However, workflow scheduling on HPC infrastructures remains challenging due to the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-26 Aurelio Vivas , Harold Castro

In this chapter we will argue that studying such multi-scale multi-science systems gives rise to inherently hybrid models containing many different algorithms best serviced by different types of computing environments (ranging from…

Astrophysics · Physics 2007-05-23 A. G. Hoekstra , S. F. Portegies Zwart , M. Bubak , P. M. A. Sloot

The importance of workflows is highlighted by the fact that they have underpinned some of the most significant discoveries of the past decades. Many of these workflows have significant computational, storage, and communication demands, and…

In the field of computational science and engineering, workflows often entail the application of various software, for instance, for simulation or pre- and postprocessing. Typically, these components have to be combined in arbitrarily…

Software Engineering · Computer Science 2022-11-15 Philipp Diercks , Dennis Gläser , Ontje Lünsdorf , Michael Selzer , Bernd Flemisch , Jörg F. Unger

We introduce Simulation Streams, a programming paradigm designed to efficiently control and leverage Large Language Models (LLMs) for complex, dynamic simulations and agentic workflows. Our primary goal is to create a minimally interfering…

Artificial Intelligence · Computer Science 2025-02-03 Peter Sunehag , Joel Z. Leibo

We present DataFlow, a computational framework for building, testing, and deploying high-performance machine learning systems on unbounded time-series data. Traditional data science workflows assume finite datasets and require substantial…

Machine Learning · Computer Science 2026-01-01 Giacinto Paolo Saggese , Paul Smith

In this paper we would like to share our experience for transforming a parallel code for a Computational Fluid Dynamics (CFD) problem into a parallel version for the RedisDG workflow engine. This system is able to capture heterogeneous and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-25 Fayssal Benkhaldoun , Christophe Cérin , Imad Kissami , Walid Saad

Stream processing is a computing paradigm that supports real-time data processing for a wide variety of applications. At Meta, it's used across the company for various tasks such as deriving product insights, providing and improving user…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-09 Animesh Dangwal , Yufeng Jiang , Charlie Arnold , Jun Fan , Mohamed Bassem , Aish Rajagopal